The role of mutation bias in adaptive molecular evolution: insights from convergent changes in protein function

Allosteric mechanisms underlying the adaptive increase in hemoglobin-oxygen affinity of the bar-headed goose

(2018) Agnieszka Jendroszek et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Divergent and parallel routes of biochemical adaptation in high-altitude passerine birds from the Qinghai-Tibet Plateau

(2018) Xiaojia Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular basis of hemoglobin adaptation in the high-flying bar-headed goose

(2018) Chandrasekhar Natarajan et al.   PLoS Genetics

Mutational Biases Influence Parallel Adaptation

(2017) Arlin Stoltzfus et al.   MOLECULAR BIOLOGY AND EVOLUTION

Stability-Mediated Epistasis Restricts Accessible Mutational Pathways in the Functional Evolution of Avian Hemoglobin

(2017) Amit Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Direct estimate of the rate of germline mutation in a bird

(2016) Linnéa Smeds et al.   GENOME RESEARCH

Extensive Variation in the Mutation Rate Between and Within Human Genes Associated with Mendelian Disease

(2016) Thomas Smith et al.   HUMAN MUTATION

Hemoglobin–oxygen affinity in high-altitude vertebrates: is there evidence for an adaptive trend?

(2016) Jay F. Storz   JOURNAL OF EXPERIMENTAL BIOLOGY

Causes of molecular convergence and parallelism in protein evolution

(2016) Jay F. Storz   NATURE REVIEWS GENETICS

Predictable convergence in hemoglobin function has unpredictable molecular underpinnings

(2016) Chandrasekhar Natarajan et al.   SCIENCE

Oxygenation properties and isoform diversity of snake hemoglobins

(2015) Jay F. Storz et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Irrational exuberance for resolved species trees

(2015) Matthew W. Hahn et al.   EVOLUTION

Contribution of a mutational hot spot to hemoglobin adaptation in high-altitude Andean house wrens

(2015) Spencer C. Galen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bypass of genetic constraints during mutator evolution to antibiotic resistance

(2015) A. Couce et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Convergent Evolution of Hemoglobin Function in High-Altitude Andean Waterfowl Involves Limited Parallelism at the Molecular Sequence Level

(2015) Chandrasekhar Natarajan et al.   PLoS Genetics

Integrating Evolutionary and Functional Tests of Adaptive Hypotheses: A Case Study of Altitudinal Differentiation in Hemoglobin Function in an Andean Sparrow, Zonotrichia capensis

(2014) Zachary A. Cheviron et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene Turnover in the Avian Globin Gene Families and Evolutionary Changes in Hemoglobin Isoform Expression

(2014) Juan C. Opazo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Epistasis Constrains Mutational Pathways of Hemoglobin Adaptation in High-Altitude Pikas

(2014) Danielle M. Tufts et al.   MOLECULAR BIOLOGY AND EVOLUTION

Modeling Evolution Using the Probability of Fixation: History and Implications

(2014) David M. McCandlish et al.   QUARTERLY REVIEW OF BIOLOGY

Comparative genomics reveals insights into avian genome evolution and adaptation

(2014) G. Zhang et al.   SCIENCE

Lack of conventional oxygen-linked proton and anion binding sites does not impair allosteric regulation of oxygen binding in dwarf caiman hemoglobin

(2013) Roy E. Weber et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Repeated elevational transitions in hemoglobin function during the evolution of Andean hummingbirds

(2013) J. Projecto-Garcia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epistasis Among Adaptive Mutations in Deer Mouse Hemoglobin

(2013) C. Natarajan et al.   SCIENCE

Gene Duplication and the Evolution of Hemoglobin Isoform Differentiation in Birds

(2012) Michael T. Grispo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

General and inducible hypermutation facilitate parallel adaptation in Pseudomonas aeruginosa despite divergent mutation spectra

(2012) M. R. Weigand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomics of Adaptation during Experimental Evolution of the Opportunistic Pathogen Pseudomonas aeruginosa

(2012) Alex Wong et al.   PLoS Genetics

Expression and Purification of Recombinant Hemoglobin in Escherichia coli

(2011) Chandrasekhar Natarajan et al.   PLoS One

Homoplasy: From Detecting Pattern to Determining Process and Mechanism of Evolution

(2011) D. B. Wake et al.   SCIENCE

Phenotypic plasticity and genetic adaptation to high-altitude hypoxia in vertebrates

(2010) J. F. Storz et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Climbing Mount Probable: Mutation as a Cause of Nonrandomness in Evolution

(2009) A. Stoltzfus et al.   JOURNAL OF HEREDITY

Stepwise acquisition of pyrimethamine resistance in the malaria parasite

(2009) E. R. Lozovsky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA