Genome editing and its applications in genetic improvement in aquaculture

Molecular Characterization of Paralichthys olivaceus MAF1 and Its Potential Role as an Anti-Viral Hemorrhagic Septicaemia Virus Factor in Hirame Natural Embryo Cells

(2021) Julan Kim et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Pomc Plays an Important Role in Sexual Size Dimorphism in Tilapia

(2021) Z. Y. Wan et al.   MARINE BIOTECHNOLOGY

Increased Efficiency for Biallelic Mutations of the CCR5 Gene by CRISPR-Cas9 Using Multiple Guide RNAs As a Novel Therapeutic Option for Human Immunodeficiency Virus

(2021) Dong Lin et al.   CRISPR Journal

Genome Editing in Livestock, Complicity, and the Technological Fix Objection

(2021) Katrien Devolder   JOURNAL OF AGRICULTURAL & ENVIRONMENTAL ETHICS

Genomic basis of striking fin shapes and colours in the fighting fish

(2021) Le Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Surrogate broodstock to enhance biotechnology research and applications in aquaculture

(2021) Ye Hwa Jin et al.   BIOTECHNOLOGY ADVANCES

Nile Tilapia: A Model for Studying Teleost Color Patterns

(2021) Chenxu Wang et al.   JOURNAL OF HEREDITY

Genome editing on finfish: Current status and implications for sustainability

(2021) Torill Bakkelund Blix et al.   Reviews in Aquaculture

Genome editing approaches to augment livestock breeding programs

(2020) Thomas Frederick Bishop et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The promise and challenge of therapeutic genome editing

(2020) Jennifer A. Doudna   NATURE

Production of genetically engineered mice with higher efficiency, lower mosaicism, and multiplexing capability using maternally expressed Cas9

(2020) Takayuki Sakurai et al.   Scientific Reports

Models of Technology Transfer for Genome-Editing Technologies

(2020) Gregory D. Graff et al.   Annual Review of Genomics and Human Genetics

An effective live attenuated vaccine against Aeromonas veronii infection in the loach (Misgurnus anguillicaudatus)

(2020) Hai-peng Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Harnessing genomics to fast-track genetic improvement in aquaculture

(2020) Ross D. Houston et al.   NATURE REVIEWS GENETICS

Progress and Perspectives in the Development of Lentiviral Vector Producer Cells

(2020) Mariana V. Ferreira et al.   Biotechnology Journal

Efficient CRISPR/Cas9 genome editing in a salmonid fish cell line using a lentivirus delivery system

(2020) Remi L. Gratacap et al.   BMC BIOTECHNOLOGY

Transgenic Expression and Genome Editing by Electroporation of Zebrafish Embryos

(2020) Changqing Zhang et al.   MARINE BIOTECHNOLOGY

Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors

(2020) Andrew V. Anzalone et al.   NATURE BIOTECHNOLOGY

Status of genetic and genomic approaches for delineating biological information and improving aquaculture production of farmed rohu, Labeo rohita (Ham, 1822)

(2020) Kiran D. Rasal et al.   Reviews in Aquaculture

Efficient Genome Editing in Multiple Salmonid Cell Lines Using Ribonucleoprotein Complexes

(2020) Remi L. Gratacap et al.   MARINE BIOTECHNOLOGY

Using prior information from humans to prioritize genes and gene-associated variants for complex traits in livestock

(2020) Biaty Raymond et al.   PLoS Genetics

Growth performance of myostatin knockout red sea bream Pagrus major juveniles produced by genome editing with CRISPR/Cas9

(2020) Mitsuki Ohama et al.   AQUACULTURE

CRISPR/Cas9-mediated knock-in of alligator cathelicidin gene in a non-coding region of channel catfish genome

(2020) Rhoda Mae C. Simora et al.   Scientific Reports

Targeted Gene Disruption in Pacific Oyster Based on CRISPR/Cas9 Ribonucleoprotein Complexes

(2019) Hong Yu et al.   MARINE BIOTECHNOLOGY

Application of surrogate broodstock technology in aquaculture

(2019) Goro Yoshizaki et al.   FISHERIES SCIENCE

Dnd1 Knockout in Sturgeons By CRISPR/Cas9 Generates Germ Cell Free Host for Surrogate Production

(2019) Abdul Rasheed Baloch et al.   Animals

Hsp70 knockdown reduced the tolerance of Litopenaeus vannamei post larvae to low pH and salinity

(2019) Kou Aishi et al.   AQUACULTURE

Production of a mutant of large-scale loach Paramisgurnus dabryanus with skin pigmentation loss by genome editing with CRISPR/Cas9 system

(2019) Xiuwen Xu et al.   TRANSGENIC RESEARCH

Potential of Genome Editing to Improve Aquaculture Breeding and Production

(2019) Remi L. Gratacap et al.   TRENDS IN GENETICS

CRISPR/Cas9-mediated ablation of elovl2 in Atlantic salmon (Salmo salar L.) inhibits elongation of polyunsaturated fatty acids and induces Srebp-1 and target genes

(2019) Alex K. Datsomor et al.   Scientific Reports

CRISPR-Cas12 and Cas13: the lesser known siblings of CRISPR-Cas9

(2019) Fancheng Yan et al.   CELL BIOLOGY AND TOXICOLOGY

CRISPR-Cas9 Gene Editing in Lizards through Microinjection of Unfertilized Oocytes

(2019) Ashley M. Rasys et al.   Cell Reports

CRISPR/Cas9-mediated myostatin disruption enhances muscle mass in the olive flounder Paralichthys olivaceus

(2019) Julan Kim et al.   AQUACULTURE

Targeted mutagenesis of the ryanodine receptor by Platinum TALENs causes slow swimming behaviour in Pacific bluefin tuna (Thunnus orientalis)

(2019) Kentaro Higuchi et al.   Scientific Reports

Strategies to reduce genetic mosaicism following CRISPR-mediated genome edition in bovine embryos

(2019) I. Lamas-Toranzo et al.   Scientific Reports

Customized one-step preparation of sgRNA transcription templates via overlapping PCR Using short primers and its application in vitro and in vivo gene editing

(2019) Zheng Hu et al.   Cell and Bioscience

Production of a breed of red sea bream Pagrus major with an increase of skeletal muscle mass and reduced body length by genome editing with CRISPR/Cas9

(2018) Kenta Kishimoto et al.   AQUACULTURE

Efficient resistance to grass carp reovirus infection in JAM-A knockout cells using CRISPR/Cas9

(2018) Jie Ma et al.   FISH & SHELLFISH IMMUNOLOGY

Genome editing in fishes and their applications

(2018) Bo Zhu et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Production of live fish derived from frozen germ cells via germ cell transplantation

(2018) Goro Yoshizaki et al.   Stem Cell Research

Genome Editing for Global Food Security

(2018) Xingliang Ma et al.   TRENDS IN BIOTECHNOLOGY

Generation of all-male-like sterile zebrafish by eliminating primordial germ cells at early development

(2018) Li Zhou et al.   Scientific Reports

The Current State and Future of CRISPR-Cas9 gRNA Design Tools

(2018) Laurence O. W. Wilson et al.   Frontiers in Pharmacology

Editing the duplicated insulin-like growth factor binding protein-2b gene in rainbow trout (Oncorhynchus mykiss)

(2018) Beth M. Cleveland et al.   Scientific Reports

High fidelity CRISPR/Cas9 increases precise monoallelic and biallelic editing events in primordial germ cells

(2018) Alewo Idoko-Akoh et al.   Scientific Reports

ASIP disruption via CRISPR/Cas9 system induces black patches dispersion in Oujiang color common carp

(2018) Honglin Chen et al.   AQUACULTURE

An effective microinjection method for genome editing of marine aquaculture fish: tiger pufferfish Takifugu rubripes and red sea bream Pagrus major

(2018) Kenta Kishimoto et al.   FISHERIES SCIENCE

Base editing: precision chemistry on the genome and transcriptome of living cells

(2018) Holly A. Rees et al.   NATURE REVIEWS GENETICS

Effects of CRISPR/Cas9 dosage on TICAM1 and RBL gene mutation rate, embryonic development, hatchability and fry survival in channel catfish

(2018) Ahmed Elaswad et al.   Scientific Reports

GuideScan software for improved single and paired CRISPR guide RNA design

(2017) Alexendar R Perez et al.   NATURE BIOTECHNOLOGY

Increasing the genome-targeting scope and precision of base editing with engineered Cas9-cytidine deaminase fusions

(2017) Y Bill Kim et al.   NATURE BIOTECHNOLOGY

Delivery technologies for genome editing

(2017) Hao Yin et al.   NATURE REVIEWS DRUG DISCOVERY

Disease reduction in aquaculture with genetic and genomic technology: current and future approaches

(2017) Ahmed Elaswad et al.   Reviews in Aquaculture

Programmable base editing of zebrafish genome using a modified CRISPR-Cas9 system

(2017) Yihan Zhang et al.   Nature Communications

Genome editing reveals dmrt1 as an essential male sex-determining gene in Chinese tongue sole (Cynoglossus semilaevis)

(2017) Zhongkai Cui et al.   Scientific Reports

Promoting Cas9 degradation reduces mosaic mutations in non-human primate embryos

(2017) Zhuchi Tu et al.   Scientific Reports

Generation of Myostatin Gene-Edited Channel Catfish (Ictalurus punctatus) via Zygote Injection of CRISPR/Cas9 System

(2017) Karim Khalil et al.   Scientific Reports

Establishing targeted carp TLR22 gene disruption via homologous recombination using CRISPR/Cas9

(2016) Vemulawada Chakrapani et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

TALENs-mediated gene disruption of myostatin produces a larger phenotype of medaka with an apparently compromised immune system

(2016) Yi-An Chiang et al.   FISH & SHELLFISH IMMUNOLOGY

Retinoic acid triggers meiosis initiation via stra8-dependent pathway in Southern catfish, Silurus meridionalis

(2016) Minghui Li et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Editing of the Luteinizing Hormone Gene to Sterilize Channel Catfish, Ictalurus punctatus, Using a Modified Zinc Finger Nuclease Technology with Electroporation

(2016) Zhenkui Qin et al.   MARINE BIOTECHNOLOGY

Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage

(2016) Alexis C. Komor et al.   NATURE

Loss-of-function genetic tools for animal models: cross-species and cross-platform differences

(2016) Benjamin E. Housden et al.   NATURE REVIEWS GENETICS

Selection response in fish and shellfish: a review

(2016) Trygve Gjedrem et al.   Reviews in Aquaculture

CRISPR/Cas9-mediated Genome Editing and Mutagenesis of EcChi4 in Exopalaemon carinicauda

(2016) T. Gui et al.   G3-Genes Genomes Genetics

Biallelic editing of a lamprey genome using the CRISPR/Cas9 system

(2016) Yao Zu et al.   Scientific Reports

Targeted disruption of sp7 and myostatin with CRISPR-Cas9 results in severe bone defects and more muscular cells in common carp

(2016) Zhaomin Zhong et al.   Scientific Reports

Dnd knockout ablates germ cells and demonstrates germ cell independent sex differentiation in Atlantic salmon

(2016) Anna Wargelius et al.   Scientific Reports

Targeted mutagenesis of aryl hydrocarbon receptor 2a and 2b genes in Atlantic killifish (Fundulus heteroclitus)

(2015) Neelakanteswar Aluru et al.   AQUATIC TOXICOLOGY

Feeding 9 billion by 2050 – Putting fish back on the menu

(2015) Christophe Béné et al.   Food Security

Retinoic acid homeostasis through aldh1a2 and cyp26a1 mediates meiotic entry in Nile tilapia (Oreochromis niloticus)

(2015) Ruijuan Feng et al.   Scientific Reports

CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites

(2014) Yuki Naito et al.   BIOINFORMATICS

Efficient and Heritable Gene Targeting in Tilapia by CRISPR/Cas9

(2014) Minghui Li et al.   GENETICS

Expanding the genetic editing tool kit: ZFNs, TALENs, and CRISPR-Cas9

(2014) Rajat M. Gupta et al.   JOURNAL OF CLINICAL INVESTIGATION

Genome editing in the human malaria parasite Plasmodium falciparum using the CRISPR-Cas9 system

(2014) Mehdi Ghorbal et al.   NATURE BIOTECHNOLOGY

E-CRISP: fast CRISPR target site identification

(2014) Florian Heigwer et al.   NATURE METHODS

A guide to genome engineering with programmable nucleases

(2014) Hyongbum Kim et al.   NATURE REVIEWS GENETICS

Targeted Mutagenesis in Atlantic Salmon (Salmo salar L.) Using the CRISPR/Cas9 System Induces Complete Knockout Individuals in the F0 Generation

(2014) Rolf B. Edvardsen et al.   PLoS One

Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity

(2013) F. Ann Ran et al.   CELL

Antagonistic Roles of Dmrt1 and Foxl2 in Sex Differentiation via Estrogen Production in Tilapia as Demonstrated by TALENs

(2013) Ming-Hui Li et al.   ENDOCRINOLOGY

Recent advances of genome mapping and marker-assisted selection in aquaculture

(2013) Gen Hua Yue   FISH AND FISHERIES

Heritable Targeted Inactivation of the Rainbow Trout (Oncorhynchus mykiss) Master Sex-Determining Gene Using Zinc-Finger Nucleases

(2013) Ayaka Yano et al.   MARINE BIOTECHNOLOGY

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

A library of TAL effector nucleases spanning the human genome

(2013) Yongsub Kim et al.   NATURE BIOTECHNOLOGY

Knockout mice created by TALEN-mediated gene targeting

(2013) Young Hoon Sung et al.   NATURE BIOTECHNOLOGY

Efficient genome editing in zebrafish using a CRISPR-Cas system

(2013) Woong Y Hwang et al.   NATURE BIOTECHNOLOGY

High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells

(2013) Yanfang Fu et al.   NATURE BIOTECHNOLOGY

Genome engineering using the CRISPR-Cas9 system

(2013) F Ann Ran et al.   Nature Protocols

Overcoming Transcription Activator-like Effector (TALE) DNA Binding Domain Sensitivity to Cytosine Methylation

(2012) Julien Valton et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

(2012) M. Jinek et al.   SCIENCE

TALEs of genome targeting

(2011) Jens Boch   NATURE BIOTECHNOLOGY

Heritable Targeted Inactivation of Myostatin Gene in Yellow Catfish (Pelteobagrus fulvidraco) Using Engineered Zinc Finger Nucleases

(2011) Zhangji Dong et al.   PLoS One

DNA Binding Made Easy

(2009) D. F. Voytas et al.   SCIENCE

A Primer for Morpholino Use in Zebrafish

(2009) Brent R. Bill et al.   Zebrafish

Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases

(2008) Yannick Doyon et al.   NATURE BIOTECHNOLOGY

Zinc Finger–Based Knockout Punches for Zebrafish Genes

(2008) Stephen C. Ekker   Zebrafish