Transplanting experiment and transcriptome sequencing reveal the potential ecological adaptation to plateau environments in the allopolyploid Isoetes sinensis

The speciation and adaptation of the polyploids: a case study of the Chinese Isoetes L. diploid-polyploid complex

(2020) Xiaokang Dai et al.   BMC EVOLUTIONARY BIOLOGY

Isoetes shangrilaensis, a new species of Isoetes from Hengduan mountain region of Shangri-la, Yunnan

(2019) XIANG LI et al.   Phytotaxa

The global biogeography of polyploid plants

(2019) Anna Rice et al.   Nature Ecology & Evolution

De novo transcriptome analysis of lettuce (Lactuca sativa L.) and the identification of structural genes involved in anthocyanin biosynthesis in response to UV-B radiation

(2019) Lili Zhang et al.   ACTA PHYSIOLOGIAE PLANTARUM

Transcriptome analysis reveals plasticity in gene regulation due to environmental cues in Primula sikkimensis, a high altitude plant species

(2019) Priya Darshini Gurung et al.   BMC GENOMICS

Extrapolation of significant genes and transcriptional regulatory networks involved in Zea mays in response in UV-B stress

(2018) Saurabh Gupta et al.   Genes & Genomics

Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions

(2018) Enrique Ostria-Gallardo et al.   NEW PHYTOLOGIST

Adaptation to high zinc depends on distinct mechanisms in metallicolous populations of Arabidopsis halleri

(2018) M. Sol Schvartzman et al.   NEW PHYTOLOGIST

Effect of cold stress on oxidative damage and mitochondrial respiratory properties in chickpea

(2018) Samaneh Karami-Moalem et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Comparative transcriptomics reveals suppressed expression of genes related to auxin and the cell cycle contributes to the resistance of cucumber against Meloidogyne incognita

(2018) Xing Wang et al.   BMC GENOMICS

Transcriptome analysis reveals the molecular mechanisms of the defense response to gray leaf spot disease in maize

(2018) Yang Yu et al.   BMC GENOMICS

An Updated Gene Atlas for Maize Reveals Organ‐Specific and Stress‐Induced Genes

(2018) Genevieve M Hoopes et al.   PLANT JOURNAL

Identification of differentially expressed proteins in bermudagrass response to cold stress in the presence of ethylene

(2017) Zhengrong Hu et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Integrated Physiological, Proteomic, and Metabolomic Analysis of Ultra Violet (UV) Stress Responses and Adaptation Mechanisms inPinus radiata

(2017) Jesús Pascual et al.   MOLECULAR & CELLULAR PROTEOMICS

High-throughput Transcriptome Sequencing Reveals the Role of Anthocyanin Metabolism in Begonia semperflorens Under High Light Stress

(2017) Jiawan Wang et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

A Proteolytic Regulator Controlling Chalcone Synthase Stability and Flavonoid Biosynthesis in Arabidopsis

(2017) Xuebin Zhang et al.   PLANT CELL

Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple

(2017) Ching M. Wai et al.   PLANT JOURNAL

Heat Shock Protein HSP101 Affects the Release of Ribosomal Protein mRNAs for Recovery after Heat Shock

(2017) Rémy Merret et al.   PLANT PHYSIOLOGY

Salicylic Acid-Dependent Plant Stress Signaling via Mitochondrial Succinate Dehydrogenase

(2017) Katharina Belt et al.   PLANT PHYSIOLOGY

Organellar Gene Expression and Acclimation of Plants to Environmental Stress

(2017) Dario Leister et al.   Frontiers in Plant Science

Plastid ribosomal protein S5 is involved in photosynthesis, plant development, and cold stress tolerance in Arabidopsis

(2016) Junxiang Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Evolutionary history of PEPC genes in green plants: Implications for the evolution of CAM in orchids

(2016) Hua Deng et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Activation tagging in indica rice identifies ribosomal proteins as potential targets for manipulation of water-use efficiency and abiotic stress tolerance in plants

(2016) Mazahar Moin et al.   PLANT CELL AND ENVIRONMENT

Transcriptome sequencing of Crucihimalaya himalaica (Brassicaceae) reveals how Arabidopsis close relative adapt to the Qinghai-Tibet Plateau

(2016) Qin Qiao et al.   Scientific Reports

Functions of Ribosomal Proteins in Assembly of Eukaryotic Ribosomes In Vivo

(2015) Jesús de la Cruz et al.   Annual Review of Biochemistry

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Transcriptome sequencing reveals population differentiation in gene expression linked to functional traits and environmental gradients in the South African shrub Protea repens

(2015) Melis Akman et al.   NEW PHYTOLOGIST

Succinate dehydrogenase (mitochondrial complex II) is a source of reactive oxygen species in plants and regulates development and stress responses

(2015) Douglas Jardim-Messeder et al.   NEW PHYTOLOGIST

Ribosome profiling reveals dynamic translational landscape in maize seedlings under drought stress

(2015) Lei Lei et al.   PLANT JOURNAL

Soybean DREB1/CBF-type transcription factors function in heat and drought as well as cold stress-responsive gene expression

(2015) Satoshi Kidokoro et al.   PLANT JOURNAL

Comparative Transcriptome Analysis of Isoetes Sinensis Under Terrestrial and Submerged Conditions

(2015) Tao Yang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Comparing photosynthetic characteristics of Isoetes sinensis Palmer under submerged and terrestrial conditions

(2015) Tao Yang et al.   Scientific Reports

Discovery of Core Biotic Stress Responsive Genes in Arabidopsis by Weighted Gene Co-Expression Network Analysis

(2015) Katherine C. H. Amrine et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Diploid and tetraploid distribution of Allium przewalskianum Regel. (Liliaceae) in the Qinghai-Tibetan Plateau and adjacent regions

(2014) Cui Xie-Kui et al.   CARYOLOGIA

From UVR8 to flavonol synthase: UV-B-induced gene expression in Sauvignon blanc grape berry

(2014) LINLIN LIU et al.   PLANT CELL AND ENVIRONMENT

Post-transcriptional control of light-harvesting genes expression under light stress

(2013) Maïna Floris et al.   PLANT MOLECULAR BIOLOGY

Transcriptome Responses to Combinations of Stresses in Arabidopsis

(2013) S. Rasmussen et al.   PLANT PHYSIOLOGY

The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity

(2013) Kazuki Saito et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Transcriptional Regulation of Ribosome Components Are Determined by Stress According to Cellular Compartments in Arabidopsis thaliana

(2011) Rodnay Sormani et al.   PLoS One

Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation

(2010) C. Masumoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Genetic diversity, phenotypic variation and local adaptation in the alpine landscape: case studies with alpine plant species

(2009) Jürg Stöcklin et al.   BOTANICA HELVETICA

Geographic range limits: achieving synthesis

(2009) K. J Gaston   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS