Adaptation to high zinc depends on distinct mechanisms in metallicolous populations of Arabidopsis halleri

Contrasting cadmium resistance strategies in two metallicolous populations of Arabidopsis halleri

(2018) Massimiliano Corso et al.   NEW PHYTOLOGIST

Similarities between Reproductive and Immune Pistil Transcriptomes of Arabidopsis Species

(2017) Mariana Mondragón-Palomino et al.   PLANT PHYSIOLOGY

TransRate: reference-free quality assessment of de novo transcriptome assemblies

(2016) Richard Smith-Unna et al.   GENOME RESEARCH

Potential preadaptation to anthropogenic pollution: evidence from a common quantitative trait locus for zinc and cadmium tolerance in metallicolous and nonmetallicolous accessions ofArabidopsis halleri

(2016) Claire-Lise Meyer et al.   NEW PHYTOLOGIST

Relationships between soil and leaf mineral composition are element-specific, environment-dependent and geographically structured in the emerging model Arabidopsis halleri

(2016) Ricardo J. Stein et al.   NEW PHYTOLOGIST

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Zinc triggers a complex transcriptional and post-transcriptional regulation of the metal homeostasis gene FRD3 in Arabidopsis relatives

(2015) Jean-Benoit Charlier et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functional analysis of the threeHMA4copies of the metal hyperaccumulatorArabidopsis halleri

(2015) Cécile Nouet et al.   JOURNAL OF EXPERIMENTAL BOTANY

Intraspecific variability of cadmium tolerance and accumulation, and cadmium-induced cell wall modifications in the metal hyperaccumulator Arabidopsis halleri

(2015) Claire-Lise Meyer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Succinate dehydrogenase (mitochondrial complex II) is a source of reactive oxygen species in plants and regulates development and stress responses

(2015) Douglas Jardim-Messeder et al.   NEW PHYTOLOGIST

The Vacuolar Manganese Transporter MTP8 Determines Tolerance to Iron Deficiency-Induced Chlorosis in Arabidopsis

(2015) Seckin Eroglu et al.   PLANT PHYSIOLOGY

CATION EXCHANGER1Cosegregates with Cadmium Tolerance in the Metal HyperaccumulatorArabidopsis halleriand Plays a Role in Limiting Oxidative Stress inArabidopsisSpp.

(2015) Cecilia Baliardini et al.   PLANT PHYSIOLOGY

Molecular mechanisms governing Arabidopsis iron uptake

(2015) Tzvetina Brumbarova et al.   TRENDS IN PLANT SCIENCE

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Contrasting effects of nicotianamine synthase knockdown on zinc and nickel tolerance and accumulation in the zinc/cadmium hyperaccumulatorArabidopsis halleri

(2014) Jean-Yves Cornu et al.   NEW PHYTOLOGIST

Araport: the Arabidopsis Information Portal

(2014) Vivek Krishnakumar et al.   NUCLEIC ACIDS RESEARCH

Responses of a Triple Mutant Defective in Three Iron Deficiency-Induced BASIC HELIX-LOOP-HELIX Genes of the Subgroup Ib(2) to Iron Deficiency and Salicylic Acid

(2014) Felix Maurer et al.   PLoS One

Origin and evolution of metal P-type ATPases in Plantae (Archaeplastida)

(2014) Marc Hanikenne et al.   Frontiers in Plant Science

Arabidopsis Copper Transport Protein COPT2 Participates in the Cross Talk between Iron Deficiency Responses and Low-Phosphate Signaling

(2013) A. Perea-Garcia et al.   PLANT PHYSIOLOGY

Feruloyl-CoA 6'-Hydroxylase1-Dependent Coumarins Mediate Iron Acquisition from Alkaline Substrates in Arabidopsis

(2013) N. B. Schmid et al.   PLANT PHYSIOLOGY

MYB10 and MYB72 Are Required for Growth under Iron-Limiting Conditions

(2013) Christine M. Palmer et al.   PLoS Genetics

Hard Selective Sweep and Ectopic Gene Conversion in a Gene Cluster Affording Environmental Adaptation

(2013) Marc Hanikenne et al.   PLoS Genetics

Control of Zn uptake in Arabidopsis halleri: a balance between Zn and Fe

(2013) Varanavasiappan Shanmugam et al.   Frontiers in Plant Science

Zinc uptake and radial transport in roots of Arabidopsis thaliana: a modelling approach to understand accumulation

(2012) Juliane Claus et al.   ANNALS OF BOTANY

Transport properties of members of the ZIP family in plants and their role in Zn and Mn homeostasis

(2012) Matthew J. Milner et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Nuclear and chloroplast DNA phylogeography reveals vicariance among European populations of the model species for the study of metal tolerance, Arabidopsis halleri (Brassicaceae)

(2012) Maxime Pauwels et al.   NEW PHYTOLOGIST

Elevated Nicotianamine Levels in Arabidopsis halleri Roots Play a Key Role in Zinc Hyperaccumulation

(2012) U. Deinlein et al.   PLANT CELL

Vacuolar Nicotianamine Has Critical and Distinct Roles under Iron Deficiency and for Zinc Sequestration in Arabidopsis

(2012) M. J. Haydon et al.   PLANT CELL

Natural Variation at the FRD3 MATE Transporter Locus Reveals Cross-Talk between Fe Homeostasis and Zn Tolerance in Arabidopsis thaliana

(2012) Christophe Pineau et al.   PLoS Genetics

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Metal hyperaccumulation and hypertolerance: a model for plant evolutionary genomics

(2011) Marc Hanikenne et al.   CURRENT OPINION IN PLANT BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Differential expression and regulation of iron-regulated metal transporters in Arabidopsis halleri and Arabidopsis thaliana - the role in zinc tolerance

(2011) Varanavasiappan Shanmugam et al.   NEW PHYTOLOGIST

Isolation and characterization of Arabidopsis halleri and Thlaspi caerulescens phytochelatin synthases

(2011) Claire-Lise Meyer et al.   PLANTA

Metal Hyperaccumulation in Plants

(2010) Ute Krämer   Annual Review of Plant Biology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Genetic architecture of zinc hyperaccumulation in Arabidopsis halleri: the essential role of QTL × environment interactions

(2010) Hélène Frérot et al.   NEW PHYTOLOGIST

Quantitative trait loci analysis of mineral element concentrations in an Arabidopsis halleri × Arabidopsis lyrata petraea F2 progeny grown on cadmium-contaminated soil

(2010) Glenda Willems et al.   NEW PHYTOLOGIST

The development of Arabidopsis as a model plant

(2010) Maarten Koornneef et al.   PLANT JOURNAL

The Five AhMTP1 Zinc Transporters Undergo Different Evolutionary Fates towards Adaptive Evolution to Zinc Tolerance in Arabidopsis halleri

(2010) Zaigham Shahzad et al.   PLoS Genetics

Genomic pattern of adaptive divergence inArabidopsis halleri, a model species for tolerance to heavy metal

(2009) CLAIRE-LISE MEYER et al.   MOLECULAR ECOLOGY

Post-Translational Regulation of AtFER2 Ferritin in Response to Intracellular Iron Trafficking during Fruit Development in Arabidopsis

(2009) Karl Ravet et al.   Molecular Plant

Reciprocal grafting separates the roles of the root and shoot in zinc hyperaccumulation inThlaspi caerulescens

(2009) Marcelo de A. Guimarães et al.   NEW PHYTOLOGIST

Arabidopsis IRT3 is a zinc-regulated and plasma membrane localized zinc/iron transporter

(2009) Ya-Fen Lin et al.   NEW PHYTOLOGIST

Variability of zinc tolerance among and within populations of the pseudometallophyte species Arabidopsis halleri and possible role of directional selection

(2009) Claire-Lise Meyer et al.   NEW PHYTOLOGIST

Molecular mechanisms of metal hyperaccumulation in plants

(2009) Nathalie Verbruggen et al.   NEW PHYTOLOGIST

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data

(2009) J. M. Ruijter et al.   NUCLEIC ACIDS RESEARCH

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

(2009) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

Arabidopsis IRT2 cooperates with the high-affinity iron uptake system to maintain iron homeostasis in root epidermal cells

(2009) Grégory Vert et al.   PLANTA

Metal movement within the plant: contribution of nicotianamine and yellow stripe 1-like transporters

(2008) Catherine Curie et al.   ANNALS OF BOTANY

Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4

(2008) Marc Hanikenne et al.   NATURE

HMA P-type ATPases are the major mechanism for root-to-shoot Cd translocation in Arabidopsis thaliana

(2008) Chong Kum Edwin Wong et al.   NEW PHYTOLOGIST

Cytokinins negatively regulate the root iron uptake machinery in Arabidopsis through a growth-dependent pathway

(2008) Mathilde Sgula et al.   PLANT JOURNAL

Ferritins control interaction between iron homeostasis and oxidative stress in Arabidopsis

(2008) Karl Ravet et al.   PLANT JOURNAL