Microbial Hotspots in Lithic Microhabitats Inferred from DNA Fractionation and Metagenomics in the Atacama Desert

Living Lithic and Sublithic Bacterial Communities in Namibian Drylands

(2021) Steffi Genderjahn et al.   Microorganisms

Methanogenic Archaea Can Produce Methane in Deliquescence-Driven Mars Analog Environments

(2020) Deborah Maus et al.   Scientific Reports

Mechanism of water extraction from gypsum rock by desert colonizing microorganisms

(2020) Wei Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CheckV assesses the quality and completeness of metagenome-assembled viral genomes

(2020) Stephen Nayfach et al.   NATURE BIOTECHNOLOGY

Substrate spatial heterogeneity reduces soil microbial activity

(2020) Andong Shi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Carbon accrual in the Atacama Desert

(2019) R. Mörchen et al.   GLOBAL AND PLANETARY CHANGE

Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert

(2019) Gherman Uritskiy et al.   ISME Journal

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Endolithic microbial habitats as refuges for life in polyextreme environment of the Atacama Desert

(2018) Jacek Wierzchos et al.   CURRENT OPINION IN MICROBIOLOGY

Fundamental drivers for endolithic microbial community assemblies in the hyperarid Atacama Desert

(2018) Victoria Meslier et al.   ENVIRONMENTAL MICROBIOLOGY

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

(2018) David Couvin et al.   NUCLEIC ACIDS RESEARCH

Transitory microbial habitat in the hyperarid Atacama Desert

(2018) Dirk Schulze-Makuch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Net Photosynthesis of Biological Soil Crusts in the Atacama Using Hyperspectral Remote Sensing

(2018) Lukas Lehnert et al.   Remote Sensing

Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy

(2018) Christian M. K. Sieber et al.   Nature Microbiology

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Preservation and Significance of Extracellular DNA in Ferruginous Sediments from Lake Towuti, Indonesia

(2017) Aurèle Vuillemin et al.   Frontiers in Microbiology

Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics

(2017) Kari M. Finstad et al.   Frontiers in Microbiology

MetaCRAST: reference-guided extraction of CRISPR spacers from unassembled metagenomes

(2017) Abraham G. Moller et al.   PeerJ

Raman imaging in geomicrobiology: endolithic phototrophic microorganisms in gypsum from the extreme sun irradiation area in the Atacama Desert

(2016) Petr Vítek et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

The Last Possible Outposts for Life on Mars

(2016) Alfonso F. Davila et al.   ASTROBIOLOGY

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

Functional interactions of archaea, bacteria and viruses in a hypersaline endolithic community

(2016) Alexander Crits-Christoph et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative Metagenomic Analysis Reveals Mechanisms for Stress Response in Hypoliths from Extreme Hyperarid Deserts

(2016) Phuong Thi Le et al.   Genome Biology and Evolution

Aliterella atlantica gen. nov., sp. nov., and Aliterella antarctica sp. nov., novel members of coccoid Cyanobacteria

(2016) Janaina Rigonato et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Measurement of bacterial replication rates in microbial communities

(2016) Christopher T Brown et al.   NATURE BIOTECHNOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA

(2016) Lucie Zinger et al.   SOIL BIOLOGY & BIOCHEMISTRY

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

Phylogenetic and Functional Substrate Specificity for Endolithic Microbial Communities in Hyper-Arid Environments

(2016) Alexander Crits-Christoph et al.   Frontiers in Microbiology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

Prediction of microbial phenotypes based on comparative genomics

(2015) Roman Feldbauer et al.   BMC BIOINFORMATICS

Comparison of the terrestrial cyanobacteriumLeptolyngbyasp. NIES-2104 and the freshwaterLeptolyngbya boryanaPCC 6306 genomes

(2015) Yohei Shimura et al.   DNA RESEARCH

Metagenomic analysis provides insights into functional capacity in a hyperarid desert soil niche community

(2015) Surendra Vikram et al.   ENVIRONMENTAL MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Unusual biology across a group comprising more than 15% of domain Bacteria

(2015) Christopher T. Brown et al.   NATURE

Microbial hotspots and hot moments in soil: Concept & review

(2015) Yakov Kuzyakov et al.   SOIL BIOLOGY & BIOCHEMISTRY

Discovery and microbial content of the driest site of the hyperarid Atacama Desert, Chile

(2015) Armando Azua-Bustos et al.   Environmental Microbiology Reports

Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks

(2015) W B Langdon   BioData Mining

Adaptation strategies of endolithic chlorophototrophs to survive the hyperarid and extreme solar radiation environment of the Atacama Desert

(2015) Jacek Wierzchos et al.   Frontiers in Microbiology

In situ metabolism in halite endolithic microbial communities of the hyperarid Atacama Desert

(2015) Alfonso F. Davila et al.   Frontiers in Microbiology

VirSorter: mining viral signal from microbial genomic data

(2015) Simon Roux et al.   PeerJ

Metagenomic analysis of the viral community in Namib Desert hypoliths

(2014) Evelien M. Adriaenssens et al.   ENVIRONMENTAL MICROBIOLOGY

A procedure for separate recovery of extra- and intracellular DNA from a single marine sediment sample

(2014) Mashal Alawi et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Hot spots, hot moments, and spatio-temporal controls on soil CO2 efflux in a water-limited ecosystem

(2014) Elievf Leon et al.   SOIL BIOLOGY & BIOCHEMISTRY

Complete genome sequence of the Radiation-Resistant bacterium Rubrobacter radiotolerans RSPS-4

(2014) C. Egas et al.   Standards in Genomic Sciences

Microbial diversity and the presence of algae in halite endolithic communities are correlated to atmospheric moisture in the hyper-arid zone of the Atacama Desert

(2013) Courtney K. Robinson et al.   ENVIRONMENTAL MICROBIOLOGY

Adaptation of an Antarctic lichen to Martian niche conditions can occur within 34 days

(2013) Jean-Pierre de Vera et al.   PLANETARY AND SPACE SCIENCE

Salt deliquescence drives photosynthesis in the hyperarid Atacama Desert

(2013) Alfonso F. Davila et al.   Environmental Microbiology Reports

Colonization patterns of soil microbial communities in the Atacama Desert

(2013) Alexander Crits-Christoph et al.   Microbiome

Hypolithic microbial communities: between a rock and a hard place

(2012) Yuki Chan et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial colonization and controls in dryland systems

(2012) Stephen B. Pointing et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Diversity and Activity of Denitrifiers of Chilean Arid Soil Ecosystems

(2012) Julieta Orlando et al.   Frontiers in Microbiology

A Microbial Oasis in the Hypersaline Atacama Subsurface Discovered by a Life Detector Chip: Implications for the Search for Life on Mars

(2011) Victor Parro et al.   ASTROBIOLOGY

Kendrick-Analogous Network Visualisation of Ion Cyclotron Resonance Fourier Transform Mass Spectra: Improved Options for the Assignment of Elemental Compositions and the Classification of Organic Molecular Complexity

(2011) D. Tziotis et al.   EUROPEAN JOURNAL OF MASS SPECTROMETRY

Improved protocol for the simultaneous extraction and column-based separation of DNA and RNA from different soils

(2011) Stefanie Töwe et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Ancient origins determine global biogeography of hot and cold desert cyanobacteria

(2011) Justin Bahl et al.   Nature Communications

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Cyanobacteria and chloroflexi-dominated hypolithic colonization of quartz at the hyper-arid core of the Atacama Desert, Chile

(2010) Donnabella C. Lacap et al.   EXTREMOPHILES

Survival of lichens and bacteria exposed to outer space conditions – Results of the Lithopanspermia experiments

(2010) Rosa de la Torre et al.   ICARUS

Hot Spots and Hot Moments in Riparian Zones: Potential for Improved Water Quality Management1

(2010) Philippe Vidon et al.   JOURNAL OF THE AMERICAN WATER RESOURCES ASSOCIATION

Hypolithic Cyanobacteria Supported Mainly by Fog in the Coastal Range of the Atacama Desert

(2010) Armando Azúa-Bustos et al.   MICROBIAL ECOLOGY

Nitrogen Fixation and Hydrogen Metabolism in Cyanobacteria

(2010) H. Bothe et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Dormancy contributes to the maintenance of microbial diversity

(2010) S. E. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contrasts between habitat generalists and specialists: an empirical extension to the basic metacommunity framework

(2009) Shubha N. Pandit et al.   ECOLOGY

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

Community-wide analysis of microbial genome sequence signatures

(2009) Gregory J Dick et al.   GENOME BIOLOGY

Fumarole-Supported Islands of Biodiversity within a Hyperarid, High-Elevation Landscape on Socompa Volcano, Puna de Atacama, Andes

(2008) E. K. Costello et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY