Complete genome sequence of the Radiation-Resistant bacterium Rubrobacter radiotolerans RSPS-4

HAMAP in 2013, new developments in the protein family classification and annotation system

(2012) I. Pedruzzi et al.   NUCLEIC ACIDS RESEARCH

Genome Sequence and Transcriptome Analysis of the Radioresistant Bacterium Deinococcus gobiensis: Insights into the Extreme Environmental Adaptations

(2012) Menglong Yuan et al.   PLoS One

Rubrobacter bracarensis sp. nov., a novel member of the genus Rubrobacter isolated from a biodeteriorated monument

(2012) Valme Jurado et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Death by protein damage in irradiated cells

(2011) Michael J. Daly   DNA REPAIR

Role and regulation of bacterial LuxR-like regulators

(2011) Jing Chen et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Characterization and Radio-resistant Function of Manganese Superoxide Dismutase of Rubrobacter radiotolerans

(2011) Hiroaki TERATO et al.   JOURNAL OF RADIATION RESEARCH

Oxidative Stress Resistance in Deinococcus radiodurans

(2011) D. Slade et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

SMART 7: recent updates to the protein domain annotation resource

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Gaiella occulta gen. nov., sp. nov., a novel representative of a deep branching phylogenetic lineage within the class Actinobacteria and proposal of Gaiellaceae fam. nov. and Gaiellales ord. nov.

(2011) Luciana Albuquerque et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

MISHIMA - a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data

(2010) Kirill Kryukov et al.   BMC BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Computational analysis of LexA regulons in Cyanobacteria

(2010) Shan Li et al.   BMC GENOMICS

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

(2010) Amrita Pati et al.   NATURE METHODS

Small-Molecule Antioxidant Proteome-Shields in Deinococcus radiodurans

(2010) Michael J. Daly et al.   PLoS One

Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans

(2010) A. Krisko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recombination and Replication in DNA Repair of Heavily Irradiated Deinococcus radiodurans

(2009) Dea Slade et al.   CELL

Description of Patulibacter americanus sp. nov., isolated from biological soil crusts, emended description of the genus Patulibacter Takahashi et al. 2006 and proposal of Solirubrobacterales ord. nov. and Thermoleophilales ord. nov.

(2009) G. S. N. Reddy et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa

(2009) X.-Y. Zhi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The ArsR Repressor Mediates Arsenite-Dependent Regulation of Arsenate Respiration and Detoxification Operons of Shewanella sp. Strain ANA-3

(2009) J. N. Murphy et al.   JOURNAL OF BACTERIOLOGY

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

(2009) Konstantinos Mavromatis et al.   Standards in Genomic Sciences

Deinococcus radiodurans: What Belongs to the Survival Kit?

(2008) Melanie Blasius et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Protein oxidation: key to bacterial desiccation resistance?

(2008) James K Fredrickson et al.   ISME Journal

A Unique Combination of Genetic Systems for the Synthesis of Trehalose in Rubrobacter xylanophilus: Properties of a Rare Actinobacterial TreT

(2008) A. Nobre et al.   JOURNAL OF BACTERIOLOGY

Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins

(2008) S. E. Maddocks et al.   MICROBIOLOGY-SGM

Constitutive SOS expression and damage-inducible AddAB-mediated recombinational repair systems forCoxiella burnetiias potential adaptations for survival within macrophages

(2008) Katja Mertens et al.   MOLECULAR MICROBIOLOGY

The minimum information about a genome sequence (MIGS) specification

(2008) Dawn Field et al.   NATURE BIOTECHNOLOGY

SUPERFAMILY—sophisticated comparative genomics, data mining, visualization and phylogeny

(2008) Derek Wilson et al.   NUCLEIC ACIDS RESEARCH

The CGView Server: a comparative genomics tool for circular genomes

(2008) J. R. Grant et al.   NUCLEIC ACIDS RESEARCH

Survival in Nuclear Waste, Extreme Resistance, and Potential Applications Gleaned from the Genome Sequence of Kineococcus radiotolerans SRS30216

(2008) Christopher E. Bagwell et al.   PLoS One

DNA mismatch repair-induced double-strand breaks

(2007) Anetta Nowosielska et al.   DNA REPAIR