Functional interactions of archaea, bacteria and viruses in a hypersaline endolithic community

Cyanobacteria in hypersaline environments: biodiversity and physiological properties

(2015) Aharon Oren   BIODIVERSITY AND CONSERVATION

Microbial diversity of hypersaline environments: a metagenomic approach

(2015) Antonio Ventosa et al.   CURRENT OPINION IN MICROBIOLOGY

Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem

(2015) Karen Andrade et al.   ISME Journal

In situ metabolism in halite endolithic microbial communities of the hyperarid Atacama Desert

(2015) Alfonso F. Davila et al.   Frontiers in Microbiology

VirSorter: mining viral signal from microbial genomic data

(2015) Simon Roux et al.   PeerJ

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG

(2014) Jonathan Crabtree et al.   BIOINFORMATICS

Unveiling viral–host interactions within the ‘microbial dark matter’

(2014) Manuel Martínez-García et al.   Nature Communications

Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies for Static and Dynamic Osmo-response

(2014) Erin A. Becker et al.   PLoS Genetics

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

PhyloSift: phylogenetic analysis of genomes and metagenomes

(2014) Aaron E. Darling et al.   PeerJ

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

(2014) Yu-Wei Wu et al.   Microbiome

Radiocarbon Evidence of Active Endolithic Microbial Communities in the Hyperarid Core of the Atacama Desert

(2013) Lori A. Ziolkowski et al.   ASTROBIOLOGY

nhmmer: DNA homology search with profile HMMs

(2013) T. J. Wheeler et al.   BIOINFORMATICS

Microbial diversity and the presence of algae in halite endolithic communities are correlated to atmospheric moisture in the hyper-arid zone of the Atacama Desert

(2013) Courtney K. Robinson et al.   ENVIRONMENTAL MICROBIOLOGY

Insights into Head-Tailed Viruses Infecting Extremely Halophilic Archaea

(2013) M. K. Pietila et al.   JOURNAL OF VIROLOGY

Assembly-Driven Community Genomics of a Hypersaline Microbial Ecosystem

(2013) Sheila Podell et al.   PLoS One

Structure of the archaeal head-tailed virus HSTV-1 completes the HK97 fold story

(2013) M. K. Pietila et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional ecology of an Antarctic Dry Valley

(2013) Y. Chan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Snapshot of haloarchaeal tailed virus genomes

(2013) Ana Senčilo et al.   RNA Biology

Virioplankton Community Structure in Tunisian Solar Salterns

(2012) Ines Boujelben et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamic Viral Populations in Hypersaline Systems as Revealed by Metagenomic Assembly

(2012) Joanne B. Emerson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Modified coat protein forms the flexible spindle-shaped virion of haloarchaeal virus His1

(2012) Maija K. Pietilä et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial colonization and controls in dryland systems

(2012) Stephen B. Pointing et al.   NATURE REVIEWS MICROBIOLOGY

Reconstructing Viral Genomes from the Environment Using Fosmid Clones: The Case of Haloviruses

(2012) Inmaculada Garcia-Heredia et al.   PLoS One

Archaeal diversity along a subterranean salt core from the Salar Grande (Chile)

(2011) Audrey Gramain et al.   ENVIRONMENTAL MICROBIOLOGY

Global network of specific virus-host interactions in hypersaline environments

(2011) Nina S. Atanasova et al.   ENVIRONMENTAL MICROBIOLOGY

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

(2011) Priya Narasingarao et al.   ISME Journal

New Abundant Microbial Groups in Aquatic Hypersaline Environments

(2011) Rohit Ghai et al.   Scientific Reports

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

(2011) Christopher S Miller et al.   GENOME BIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

CRISPR elements in the Thermococcales: evidence for associated horizontal gene transfer inPyrococcus furiosus

(2010) M. C. Portillo et al.   JOURNAL OF APPLIED GENETICS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

The Genome Sequence ofMethanohalophilus mahiiSLPTReveals Differences in the Energy Metabolism among Members of theMethanosarcinaceaeInhabiting Freshwater and Saline Environments

(2010) Stefan Spring et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

The Single-Stranded DNA Genome of Novel Archaeal Virus Halorubrum Pleomorphic Virus 1 Is Enclosed in the Envelope Decorated with Glycoprotein Spikes

(2009) M. K. Pietila et al.   JOURNAL OF VIROLOGY

Virus-host interactions in environments with a wide range of ionic strengths

(2009) Petra Kukkaro et al.   Environmental Microbiology Reports

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Metabolism of halophilic archaea

(2008) Michaela Falb et al.   EXTREMOPHILES

Facilitation of endolithic microbial survival in the hyperarid core of the Atacama Desert by mineral deliquescence

(2008) Alfonso F. Davila et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes

(2008) Sandip Paul et al.   GENOME BIOLOGY

The spatial and temporal variability of fog and its relation to fog oases in the Atacama Desert, Chile

(2007) P. Cereceda et al.   ATMOSPHERIC RESEARCH

The climate of the coast and fog zone in the Tarapacá Region, Atacama Desert, Chile

(2007) P. Cereceda et al.   ATMOSPHERIC RESEARCH