Prediction of microbial phenotypes based on comparative genomics

Unusual biology across a group comprising more than 15% of domain Bacteria

(2015) Christopher T. Brown et al.   NATURE

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

(2015) Eric A. Franzosa et al.   NATURE REVIEWS MICROBIOLOGY

Intranuclear bacteria: inside the cellular control center of eukaryotes

(2015) Frederik Schulz et al.   TRENDS IN CELL BIOLOGY

An ontology for microbial phenotypes

(2014) Marcus C Chibucos et al.   BMC MICROBIOLOGY

Carbohydrate Metabolism in Archaea: Current Insights into Unusual Enzymes and Pathways and Their Regulation

(2014) C. Brasen et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

Accurate and universal delineation of prokaryotic species

(2013) Daniel R Mende et al.   NATURE METHODS

Efficient learning of microbial genotype–phenotype association rules

(2010) Norman J. MacDonald et al.   BIOINFORMATICS

A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches

(2010) David M. Kristensen et al.   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Analysis of Biostimulated Microbial Communities from Two Field Experiments Reveals Temporal and Spatial Differences in Proteome Profiles

(2010) Stephen J. Callister et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

(2009) J. Muller et al.   NUCLEIC ACIDS RESEARCH

Chlamydiae as Symbionts in Eukaryotes

(2008) Matthias Horn   Annual Review of Microbiology

Diversity of Bacterial Endosymbionts of Environmental Acanthamoeba Isolates

(2008) S. Schmitz-Esser et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial genotype–phenotype mapping by class association rule mining

(2008) Makio Tamura et al.   BIOINFORMATICS

Evolution of genome architecture

(2008) Eugene V. Koonin   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY