Associative Overdominance and Negative Epistasis Shape Genome-Wide Ancestry Landscape in Supplemented Fish Populations

Multiple decades of stocking has resulted in limited hatchery introgression in wild brook trout ( Salvelinus fontinalis ) populations of Nova Scotia

(2020) Sarah J. Lehnert et al.   Evolutionary Applications

Adaptive and maladaptive genetic diversity in small populations: Insights from the Brook Charr ( Salvelinus fontinalis ) case study

(2020) Anne‐Laure Ferchaud et al.   MOLECULAR ECOLOGY

Genetic rescue and the maintenance of native ancestry

(2019) Kelley Harris et al.   CONSERVATION GENETICS

Supplementary stocking selects for domesticated genotypes

(2019) Ingerid J. Hagen et al.   Nature Communications

Recombination rate variation shapes barriers to introgression across butterfly genomes

(2019) Simon H. Martin et al.   PLOS BIOLOGY

Impacts of stocking and its intensity on effective population size in Brook Charr (Salvelinus fontinalis) populations

(2019) Philippine Gossieaux et al.   CONSERVATION GENETICS

The role of recombination on genome‐wide patterns of local ancestry exemplified by supplemented brook charr populations

(2019) Maeva Leitwein et al.   MOLECULAR ECOLOGY

DNA methylation reprogramming, TE derepression, and postzygotic isolation of nascent animal species

(2019) M. Laporte et al.   Science Advances

Transition from Background Selection to Associative Overdominance Promotes Diversity in Regions of Low Recombination

(2019) Kimberly J. Gilbert et al.   CURRENT BIOLOGY

Using Haplotype Information for Conservation Genomics

(2019) Maeva Leitwein et al.   TRENDS IN ECOLOGY & EVOLUTION

Limited hatchery introgression into wild brook trout (Salvelinus fontinalis ) populations despite reoccurring stocking

(2018) Shannon L. White et al.   Evolutionary Applications

Morphologically indistinguishable hybrid Carassius female with 156 chromosomes: A threat for the threatened crucian carp, C. carassius, L

(2018) Martin Knytl et al.   PLoS One

Natural selection interacts with recombination to shape the evolution of hybrid genomes

(2018) Molly Schumer et al.   SCIENCE

The origin and remolding of genomic islands of differentiation in the European sea bass

(2018) Maud Duranton et al.   Nature Communications

Deleterious alleles in the context of domestication, inbreeding, and selection

(2018) Mirte Bosse et al.   Evolutionary Applications

Genomic consequences of a recent three-way admixture in supplemented wild brown trout populations revealed by local ancestry tracts

(2018) Maeva Leitwein et al.   MOLECULAR ECOLOGY

The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly

(2018) Kris A. Christensen et al.   PLoS One

Conservation of adaptive potential and functional diversity: integrating old and new approaches

(2018) Barbara K. Mable   CONSERVATION GENETICS

Poor understanding of evolutionary theory is a barrier to effective conservation management

(2018) Carly N. Cook et al.   Conservation Letters

Deleterious variation shapes the genomic landscape of introgression

(2018) Bernard Y. Kim et al.   PLoS Genetics

Predicting the genetic impact of stocking in Brook Charr (Salvelinus fontinalis ) by combining RAD sequencing and modeling of explanatory variables

(2017) Justine Létourneau et al.   Evolutionary Applications

Unexpected high genetic diversity in small populations suggests maintenance by associative overdominance

(2017) Mads F. Schou et al.   MOLECULAR ECOLOGY

Reintroduction of the endangered and endemic plant species Cochlearia bavarica -Implications from conservation genetics

(2017) Franziska Kaulfuß et al.   Ecology and Evolution

Hybridization and extinction

(2016) Marco Todesco et al.   Evolutionary Applications

The Genetic Cost of Neanderthal Introgression

(2016) Kelley Harris et al.   GENETICS

Salmonid chromosome evolution as revealed by a novel method for comparing RADseq linkage maps

(2016) Ben J. G. Sutherland et al.   Genome Biology and Evolution

Understanding Inbreeding Depression, Purging, and Genetic Rescue

(2016) Philip W. Hedrick et al.   TRENDS IN ECOLOGY & EVOLUTION

The Genetic Cost of Neanderthal Introgression

(2016) Kelley Harris et al.   GENETICS

The genetic architecture of hybrid incompatibilities and their effect on barriers to introgression in secondary contact

(2015) Dorothea Lindtke et al.   EVOLUTION

Genetic rescue of small inbred populations: meta-analysis reveals large and consistent benefits of gene flow

(2015) Richard Frankham   MOLECULAR ECOLOGY

Evidence for archaic adaptive introgression in humans

(2015) Fernando Racimo et al.   NATURE REVIEWS GENETICS

HOW COMMON IS HOMOPLOID HYBRID SPECIATION?

(2014) Molly Schumer et al.   EVOLUTION

Detecting Structure of Haplotypes and Local Ancestry

(2014) Y. Guan   GENETICS

Hybridization, Introgression, and the Nature of Species Boundaries

(2014) Richard G. Harrison et al.   JOURNAL OF HEREDITY

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

RNA-seq Reveals Transcriptomic Shock Involving Transposable Elements Reactivation in Hybrids of Young Lake Whitefish Species

(2014) Anne-Marie Dion-Côté et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic landscape of Neanderthal ancestry in present-day humans

(2014) Sriram Sankararaman et al.   NATURE

Chromosome Studies of European Cyprinid Fishes: Cross-Species Painting Reveals Natural Allotetraploid Origin of a Carassius Female with 206 Chromosomes

(2013) M. Knytl et al.   CYTOGENETIC AND GENOME RESEARCH

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

Dynamics of introgressive hybridization assessed by SNP population genomics of coding genes in stocked brook charr (Salvelinus fontinalis)

(2012) FABIEN C. LAMAZE et al.   MOLECULAR ECOLOGY

How does adaptation sweep through the genome? Insights from long-term selection experiments

(2012) M. K. Burke   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

What is the evidence for heterozygote advantage selection?

(2012) Philip W. Hedrick   TRENDS IN ECOLOGY & EVOLUTION

The Genetics of Hybrid Incompatibilities

(2011) Shamoni Maheshwari et al.   Annual Review of Genetics

Predicting the Probability of Outbreeding Depression

(2011) RICHARD FRANKHAM et al.   CONSERVATION BIOLOGY

Founder events predict changes in genetic diversity during human-mediated range expansions

(2011) Tobias Uller et al.   GLOBAL CHANGE BIOLOGY

Mixed-source reintroductions lead to outbreeding depression in second-generation descendents of a native North American fish

(2011) DAVID D. HUFF et al.   MOLECULAR ECOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Challenges and opportunities of genetic approaches to biological conservation

(2010) Richard Frankham   BIOLOGICAL CONSERVATION

Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches

(2010) Gordon Luikart et al.   CONSERVATION GENETICS

The Transcriptional Landscape of Cross-Specific Hybrids and Its Possible Link With Growth in Brook Charr ( Salvelinus fontinalis Mitchill)

(2010) Bérénice Bougas et al.   GENETICS

Transcriptome-wide signature of hybrid breakdown associated with intrinsic reproductive isolation in lake whitefish species pairs (Coregonus spp. Salmonidae)

(2010) S Renaut et al.   HEREDITY

Loss of genetic integrity correlates with stocking intensity in brook charr (Salvelinus fontinalis)

(2010) A. D. MARIE et al.   MOLECULAR ECOLOGY

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Compromising genetic diversity in the wild: unmonitored large-scale release of plants and animals

(2010) Linda Laikre et al.   TRENDS IN ECOLOGY & EVOLUTION

Molecular mechanisms of polyploidy and hybrid vigor

(2010) Z. Jeffrey Chen   TRENDS IN PLANT SCIENCE

Where are we in conservation genetics and where do we need to go?

(2009) Richard Frankham   CONSERVATION GENETICS

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

THE HIDDEN SIDE OF INVASIONS: MASSIVE INTROGRESSION BY LOCAL GENES

(2008) Mathias Currat et al.   EVOLUTION

Genetic adaptation to captivity in species conservation programs

(2007) RICHARD FRANKHAM   MOLECULAR ECOLOGY

The role of hybridization in evolution

(2003) N. H. Barton   MOLECULAR ECOLOGY