Spatiotemporal Dynamics of Maize (Zea mays L.) Root Growth and Its Potential Consequences for the Assembly of the Rhizosphere Microbiota

Biocontrol Traits Correlate With Resistance to Predation by Protists in Soil Pseudomonads

(2021) Nathalie Amacker et al.   Frontiers in Microbiology

Assembly Patterns of the Rhizosphere Microbiome Along the Longitudinal Root Axis of Maize (Zea mays L.)

(2021) Lioba Rüger et al.   Frontiers in Microbiology

Multitrophic interactions in the rhizosphere microbiome of wheat: from bacteria and fungi to protists

(2020) Maike Rossmann et al.   FEMS MICROBIOLOGY ECOLOGY

Niche differentiation is spatially and temporally regulated in the rhizosphere

(2020) Erin E. Nuccio et al.   ISME Journal

Root ethylene mediates rhizosphere microbial community reconstruction when chemically detecting cyanide produced by neighbouring plants

(2020) Yan Chen et al.   Microbiome

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Identification of Loci That Confer Resistance to Bacterial and Fungal Diseases of Maize

(2020) Yuting Qiu et al.   G3-Genes Genomes Genetics

Pinpointing secondary metabolites that shape the composition and function of the plant microbiome

(2020) Richard P Jacoby et al.   JOURNAL OF EXPERIMENTAL BOTANY

Rhizosphere hotspots: Root hairs and warming control microbial efficiency, carbon utilization and energy production

(2020) Xuechen Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

(2020) Shawn P. Brown et al.   Microbiome

Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype

(2019) Gregory Bonito et al.   Frontiers in Microbiology

Disentangling carbon flow across microbial kingdoms in the rhizosphere of maize

(2019) Maike Hünninghaus et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metabolic regulation of the maize rhizobiome by benzoxazinoids

(2019) T. E. Anne Cotton et al.   ISME Journal

Strategy for Structural Elucidation of Polysaccharides: Elucidation of a Maize Mucilage that Harbors Diazotrophic Bacteria

(2019) Matthew J. Amicucci et al.   ANALYTICAL CHEMISTRY

The inconspicuous gatekeeper: endophytic Serendipita vermifera acts as extended plant protection barrier in the rhizosphere

(2019) Debika Sarkar et al.   NEW PHYTOLOGIST

Rhizosphere size and shape: Temporal dynamics and spatial stationarity

(2019) Yakov Kuzyakov et al.   SOIL BIOLOGY & BIOCHEMISTRY

Maize synthesized benzoxazinoids affect the host associated microbiome

(2019) Enoch Narh Kudjordjie et al.   Microbiome

Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin

(2019) Allison M. Veach et al.   Microbiome

The Role of Volatile Organic Compounds and Rhizosphere Competence in Mode of Action of the Non-pathogenic Fusarium oxysporum FO12 Toward Verticillium Wilt

(2019) Antonio Mulero-Aparicio et al.   Frontiers in Microbiology

Mechanical and Hydric Stress Effects on Maize Root System Development at Different Soil Compaction Levels

(2019) Moacir Tuzzin de Moraes et al.   Frontiers in Plant Science

Microbiome Multi-Omics Network Analysis: Statistical Considerations, Limitations, and Opportunities

(2019) Duo Jiang et al.   Frontiers in Genetics

Plant growth stages and fertilization regimes drive soil fungal community compositions in a wheat-rice rotation system

(2018) Jichen Wang et al.   BIOLOGY AND FERTILITY OF SOILS

Road MAPs to engineer host microbiomes

(2018) Ben O Oyserman et al.   CURRENT OPINION IN MICROBIOLOGY

Insights to plant-microbe interactions provide opportunities to improve resistance breeding against root diseases in grain legumes

(2018) Lukas Wille et al.   PLANT CELL AND ENVIRONMENT

Large-scale replicated field study of maize rhizosphere identifies heritable microbes

(2018) William A. Walters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Priority effects are weakened by a short, but not long, history of sympatric evolution

(2018) Peter C. Zee et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Root development impacts on the distribution of phosphatase activity: Improvements in quantification using soil zymography

(2018) C.D. Giles et al.   SOIL BIOLOGY & BIOCHEMISTRY

Genetic Control of Root System Development in Maize

(2018) Frank Hochholdinger et al.   TRENDS IN PLANT SCIENCE

Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota

(2018) Lingfei Hu et al.   Nature Communications

Rhizosphere Competence and Biocontrol Effect of Pseudomonas sp. RU47 Independent from Plant Species and Soil Type at the Field Scale

(2018) Susanne Schreiter et al.   Frontiers in Microbiology

Plant host habitat and root exudates shape fungal diversity

(2018) Mylène Hugoni et al.   MYCORRHIZA

Protists: Puppet Masters of the Rhizosphere Microbiome

(2018) Zhilei Gao et al.   TRENDS IN PLANT SCIENCE

The Role of Host Genetic Signatures on Root–Microbe Interactions in the Rhizosphere and Endosphere

(2018) Peng Yu et al.   Frontiers in Plant Science

Protists are an integral part of the Arabidopsis thaliana microbiome

(2017) Melanie Sapp et al.   ENVIRONMENTAL MICROBIOLOGY

Grazing of leaf-associated Cercomonads (Protists: Rhizaria: Cercozoa) structures bacterial community composition and function

(2017) Sebastian Flues et al.   ENVIRONMENTAL MICROBIOLOGY

Breeding for mycorrhizal symbiosis: focus on disease resistance

(2017) Pierre Hohmann et al.   EUPHYTICA

Soil protist communities form a dynamic hub in the soil microbiome

(2017) Wu Xiong et al.   ISME Journal

Influence of resistance breeding in common bean on rhizosphere microbiome composition and function

(2017) Lucas William Mendes et al.   ISME Journal

The Impact of the Diurnal Cycle on the Microbial Transcriptome in the Rhizosphere of Barley

(2017) Divyashri Baraniya et al.   MICROBIAL ECOLOGY

Root type and soil phosphate determine the taxonomic landscape of colonizing fungi and the transcriptome of field-grown maize roots

(2017) Peng Yu et al.   NEW PHYTOLOGIST

Changes in bacterial community composition and soil respiration indicate rapid successions of protist grazers during mineralization of maize crop residues

(2017) Maike Hünninghaus et al.   PEDOBIOLOGIA

Arbuscular mycorrhizal fungi inoculation mediated changes in rhizosphere bacterial community structure while promoting revegetation in a semiarid ecosystem

(2017) G. Rodríguez-Caballero et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Bio-fertilizer application induces soil suppressiveness against Fusarium wilt disease by reshaping the soil microbiome

(2017) Wu Xiong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil protistology rebooted: 30 fundamental questions to start with

(2017) Stefan Geisen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant Breeding Goes Microbial

(2017) Zhong Wei et al.   TRENDS IN PLANT SCIENCE

Root Border Cells and Their Role in Plant Defense

(2016) Martha Hawes et al.   Annual Review of Phytopathology

Protozoa stimulate the plant beneficial activity of rhizospheric pseudomonads

(2016) Simone Weidner et al.   PLANT AND SOIL

Root type specific reprogramming of maize pericycle transcriptomes by local high nitrate results in disparate lateral root branching patterns

(2016) Peng Yu et al.   PLANT PHYSIOLOGY

Genetic Control of Lateral Root Formation in Cereals

(2016) Peng Yu et al.   TRENDS IN PLANT SCIENCE

Metabolomics in the Rhizosphere: Tapping into Belowground Chemical Communication

(2016) Nicole M. van Dam et al.   TRENDS IN PLANT SCIENCE

Mechanisms of Early Microbial Establishment on Growing Root Surfaces

(2016) Lionel X. Dupuy et al.   VADOSE ZONE JOURNAL

An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development

(2016) Scott C. Stelpflug et al.   Plant Genome

Wheat and Rice Growth Stages and Fertilization Regimes Alter Soil Bacterial Community Structure, But Not Diversity

(2016) Jichen Wang et al.   Frontiers in Microbiology

Plant Drought Tolerance Enhancement by Trehalose Production of Desiccation-Tolerant Microorganisms

(2016) Juan I. Vílchez et al.   Frontiers in Microbiology

Using Ancient Traits to Convert Soil Health into Crop Yield: Impact of Selection on Maize Root and Rhizosphere Function

(2016) Jennifer E. Schmidt et al.   Frontiers in Plant Science

De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure

(2016) Camilla Beate Hill et al.   Scientific Reports

Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

(2015) Tadashi Fukami   Annual Review of Ecology Evolution and Systematics

Responses to N Deficiency in Stay Green and Non-Stay Green Argentinean Hybrids of Maize

(2015) M. Antonietta et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Transcriptomic and anatomical complexity of primary, seminal, and crown roots highlight root type-specific functional diversity in maize (Zea maysL.)

(2015) Huanhuan Tai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cell Type-Specific Gene Expression Analyses by RNA Sequencing Reveal Local High Nitrate-Triggered Lateral Root Initiation in Shoot-Borne Roots of Maize by Modulating Auxin-Related Cell Cycle Regulation

(2015) Peng Yu et al.   PLANT PHYSIOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Baiting of rhizosphere bacteria with hyphae of common soil fungi reveals a diverse group of potentially mycophagous secondary consumers

(2015) M.B. Rudnick et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comparison of root system architecture and rhizosphere microbial communities of Balsas teosinte and domesticated corn cultivars

(2015) Márton Szoboszlay et al.   SOIL BIOLOGY & BIOCHEMISTRY

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Molecular and chemical dialogues in bacteria-protozoa interactions

(2015) Chunxu Song et al.   Scientific Reports

Genetic, evolutionary and plant breeding insights from the domestication of maize

(2015) Sarah Hake et al.   eLife

Evolution of bacterial communities in the wheat crop rhizosphere

(2014) Suzanne Donn et al.   ENVIRONMENTAL MICROBIOLOGY

Root microbiome relates to plant host evolution in maize and other Poaceae

(2014) Marie-Lara Bouffaud et al.   ENVIRONMENTAL MICROBIOLOGY

New maize hybrids had larger and deeper post-silking root than old ones

(2014) Peng Ning et al.   FIELD CROPS RESEARCH

Root exudation of phytosiderophores from soil-grown wheat

(2014) Eva Oburger et al.   NEW PHYTOLOGIST

Soil Type Dependent Rhizosphere Competence and Biocontrol of Two Bacterial Inoculant Strains and Their Effects on the Rhizosphere Microbial Community of Field-Grown Lettuce

(2014) Susanne Schreiter et al.   PLoS One

Root exudates mediated interactions belowground

(2014) Feth el Zahar Haichar et al.   SOIL BIOLOGY & BIOCHEMISTRY

An arbuscular mycorrhizal fungus significantly modifies the soil bacterial community and nitrogen cycling during litter decomposition

(2013) Erin E. Nuccio et al.   ENVIRONMENTAL MICROBIOLOGY

Host signature effect on plant root-associated microbiomes revealed through analyses of residentvs. active communities

(2013) Maya Ofek et al.   ENVIRONMENTAL MICROBIOLOGY

Detection and quantification of native microbial populations on soil-grown rice roots by catalyzed reporter deposition-fluorescencein situhybridization

(2013) Hannes Schmidt et al.   FEMS MICROBIOLOGY ECOLOGY

Diversity of protists and bacteria determines predation performance and stability

(2013) Muhammad Saleem et al.   ISME Journal

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Rapid prey evolution can alter the structure of predator-prey communities

(2013) V.-P. Friman et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Protozoa enhance foraging efficiency of arbuscular mycorrhizal fungi for mineral nitrogen from organic matter in soil to the benefit of host plants

(2013) Robert Koller et al.   NEW PHYTOLOGIST

Correction: Root Exudation of Phytochemicals in Arabidopsis Follows Specific Patterns That Are Developmentally Programmed and Correlate with Soil Microbial Functions

(2013) Jacqueline M. Chaparro et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protozoa stimulate N uptake and growth of arbuscular mycorrhizal plants

(2013) Robert Koller et al.   SOIL BIOLOGY & BIOCHEMISTRY

Active microorganisms in soil: Critical review of estimation criteria and approaches

(2013) Evgenia Blagodatskaya et al.   SOIL BIOLOGY & BIOCHEMISTRY

Root exudates: the hidden part of plant defense

(2013) Ulrike Baetz et al.   TRENDS IN PLANT SCIENCE

Starch turnover: pathways, regulation and role in growth

(2012) Mark Stitt et al.   CURRENT OPINION IN PLANT BIOLOGY

Roles of root border cells in plant defense and regulation of rhizosphere microbial populations by extracellular DNA ‘trapping’

(2012) Martha C. Hawes et al.   PLANT AND SOIL

Predator richness increases the effect of prey diversity on prey yield

(2012) Muhammad Saleem et al.   Nature Communications

Microbially Mediated Plant Functional Traits

(2011) Maren L. Friesen et al.   Annual Review of Ecology Evolution and Systematics

Ecological and evolutive implications of bacterial defences against predators

(2011) Alexandre Jousset   ENVIRONMENTAL MICROBIOLOGY

Predator-Prey Chemical Warfare Determines the Expression of Biocontrol Genes by Rhizosphere-Associated Pseudomonas fluorescens

(2010) A. Jousset et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Closely related protist strains have different grazing impacts on natural bacterial communities

(2010) Edvard Glücksman et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial diversity on the surface of potato tubers in soil and the influence of the plant genotype

(2010) Nicole Weinert et al.   FEMS MICROBIOLOGY ECOLOGY

Root Secretion of Defense-related Proteins Is Development-dependent and Correlated with Flowering Time

(2010) Clelia De-la-Peña et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Root Colonization by Pseudomonas sp. DSMZ 13134 and Impact on the Indigenous Rhizosphere Bacterial Community of Barley

(2010) Katharina Buddrus-Schiemann et al.   MICROBIAL ECOLOGY

Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2

(2010) B. Drigo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

The model predator Acanthamoeba castellanii induces the production of 2,4, DAPG by the biocontrol strain Pseudomonas fluorescens Q2-87

(2010) Alexandre Jousset et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant genotype strongly modifies the structure and growth of maize rhizosphere microbial communities

(2010) Manuel Aira et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana

(2009) Katja Rosenberg et al.   ISME Journal

Phase variation has a role in Burkholderia ambifaria niche adaptation

(2009) Ludovic Vial et al.   ISME Journal

Predators promote defence of rhizosphere bacterial populations by selective feeding on non-toxic cheaters

(2009) Alexandre Jousset et al.   ISME Journal

Rhizodeposition of maize: Short-term carbon budget and composition

(2009) Holger Fischer et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

Influence of plant developmental stage on microbial community structure and activity in the rhizosphere of three field crops

(2008) Ashley Houlden et al.   FEMS MICROBIOLOGY ECOLOGY

Community analysis of arbuscular mycorrhizal fungi and bacteria in the maize mycorrhizosphere in a long-term fertilization trial

(2008) Jonas F. Toljander et al.   FEMS MICROBIOLOGY ECOLOGY

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

Plant-driven selection of microbes

(2008) Anton Hartmann et al.   PLANT AND SOIL

Jasmonic acid treatment to part of the root system is consistent with simulated leaf herbivory, diverting recently assimilated carbon towards untreated roots within an hour

(2008) GUNNAR JAKOB HENKES et al.   PLANT CELL AND ENVIRONMENT