A high-quality genome assembly highlights rye genomic characteristics and agronomically important genes

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

(2021) M. Timothy Rabanus-Wallace et al.   NATURE GENETICS

Evolutionary insights into plant breeding

(2020) Sarah D Turner-Hissong et al.   CURRENT OPINION IN PLANT BIOLOGY

Stepwise selection on homeologous PRR genes controlling flowering and maturity during soybean domestication

(2020) Sijia Lu et al.   NATURE GENETICS

AP2/ERF Transcription Factor Regulatory Networks in Hormone and Abiotic Stress Responses in Arabidopsis

(2019) Zhouli Xie et al.   Frontiers in Plant Science

Durum wheat genome highlights past domestication signatures and future improvement targets

(2019) Marco Maccaferri et al.   NATURE GENETICS

Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome

(2019) Fei He et al.   NATURE GENETICS

Revolutions in agriculture chart a course for targeted breeding of old and new crops

(2019) Yuval Eshed et al.   SCIENCE

Genetic diversity and relationship between domesticated rye and its wild relatives as revealed through genotyping-by-sequencing

(2018) Mona Schreiber et al.   Evolutionary Applications

Triticale: Nutritional composition and food uses

(2018) Fan Zhu   FOOD CHEMISTRY

Defended to the Nines: 25 Years of Resistance Gene Cloning Identifies Nine Mechanisms for R Protein Function

(2018) Jiorgos Kourelis et al.   PLANT CELL

Genome sequence of the progenitor of wheat A subgenome Triticum urartu

(2018) Hong-Qing Ling et al.   NATURE

One Major Challenge of Sequencing Large Plant Genomes Is to Know How Big They Really Are

(2018) Jaroslav Doležel et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

(2017) Ming-Cheng Luo et al.   NATURE

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

Reconstructing the genome of the most recent common ancestor of flowering plants

(2017) Florent Murat et al.   NATURE GENETICS

New insights into structural organization and gene duplication in a 1.75-Mb genomic region harboring the α-gliadin gene family in Aegilops tauschii , the source of wheat D genome

(2017) Naxin Huo et al.   PLANT JOURNAL

Towards a whole-genome sequence for rye (Secale cerealeL.)

(2017) Eva Bauer et al.   PLANT JOURNAL

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication

(2017) Raz Avni et al.   SCIENCE

QTL mapping and comparative genome analysis of agronomic traits including grain yield in winter rye

(2017) Bernd Hackauf et al.   THEORETICAL AND APPLIED GENETICS

Molecular Cytogenetic Characterization of Novel Wheat-rye T1RS.1BL Translocation Lines with High Resistance to Diseases and Great Agronomic Traits

(2017) Tianheng Ren et al.   Frontiers in Plant Science

Rapid amplification of four retrotransposon families promoted speciation and genome size expansion in the genus Panax

(2017) Junki Lee et al.   Scientific Reports

Disease Impact on Wheat Yield Potential and Prospects of Genetic Control

(2016) Ravi P. Singh et al.   Annual Review of Phytopathology

Post-Translational Regulation of FLOWERING LOCUS T Protein in Arabidopsis

(2016) Soo-Jin Kim et al.   Molecular Plant

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases

(2016) Yi Zheng et al.   Molecular Plant

A Phos-tag SDS-PAGE method that effectively uses phosphoproteomic data for profiling the phosphorylation dynamics of MEK1

(2016) Eiji Kinoshita et al.   PROTEOMICS

Lessons from Domestication: Targeting Cis -Regulatory Elements for Crop Improvement

(2016) Gwen Swinnen et al.   TRENDS IN PLANT SCIENCE

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Evolution of the Grain Dispersal System in Barley

(2015) Mohammad Pourkheirandish et al.   CELL

Genome Alignment Spanning Major Poaceae Lineages Reveals Heterogeneous Evolutionary Rates and Alters Inferred Dates for Key Evolutionary Events

(2015) Xiyin Wang et al.   Molecular Plant

Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis

(2015) Yong-Bo Duan et al.   PLANT MOLECULAR BIOLOGY

Diversity resistance to Puccinia striiformis f. sp Tritici in rye chromosome arm 1RS expressed in wheat

(2014) M.Y. Yang et al.   GENETICS AND MOLECULAR RESEARCH

Oligonucleotides replacing the roles of repetitive sequences pAs1, pSc119.2, pTa-535, pTa71, CCS1, and pAWRC.1 for FISH analysis

(2014) Zongxiang Tang et al.   JOURNAL OF APPLIED GENETICS

Integrated Syntenic and Phylogenomic Analyses Reveal an Ancient Genome Duplication in Monocots

(2014) Yuannian Jiao et al.   PLANT CELL

Sequencing of Chloroplast Genomes from Wheat, Barley, Rye and Their Relatives Provides a Detailed Insight into the Evolution of the Triticeae Tribe

(2014) Christopher P. Middleton et al.   PLoS One

Construction and Analysis of High-Density Linkage Map Using High-Throughput Sequencing Data

(2014) Dongyuan Liu et al.   PLoS One

Ancient hybridizations among the ancestral genomes of bread wheat

(2014) T. Marcussen et al.   SCIENCE

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity

(2013) Jianjian Qi et al.   NATURE GENETICS

Reticulate Evolution of the Rye Genome

(2013) M. M. Martis et al.   PLANT CELL

ArabidopsisPhytochrome B Promotes SPA1 Nuclear Accumulation to Repress Photomorphogenesis under Far-Red Light

(2013) Xu Zheng et al.   PLANT CELL

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

(2013) Xiaowen Sun et al.   PLoS One

Bioactive compounds in cereal grains – occurrence, structure, technological significance and nutritional benefits – a review

(2012) Siurek Bartłomiej et al.   FOOD SCIENCE AND TECHNOLOGY INTERNATIONAL

Polymorphism of the storage proteins in Portuguese rye (Secale cereale L.) populations

(2012) Miguel Ribeiro et al.   HEREDITAS

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Population differentiation as a test for selective sweeps

(2010) H. Chen et al.   GENOME RESEARCH

Molecular and Functional Characterization of PEBP Genes in Barley Reveal the Diversification of Their Roles in Flowering

(2009) R. Kikuchi et al.   PLANT PHYSIOLOGY

A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R

(2008) Jan Bartoš et al.   BMC PLANT BIOLOGY

Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution

(2008) J. Salse et al.   PLANT CELL

Ehd2, a Rice Ortholog of the Maize INDETERMINATE1 Gene, Promotes Flowering by Up-Regulating Ehd1

(2008) K. Matsubara et al.   PLANT PHYSIOLOGY

RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice

(2008) C. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Acc homoeoloci and the evolution of wheat genomes

(2008) D. Chalupska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA