Genetic diversity and relationship between domesticated rye and its wild relatives as revealed through genotyping-by-sequencing

Towards a whole-genome sequence for rye (Secale cerealeL.)

(2017) Eva Bauer et al.   PLANT JOURNAL

Identification of Single Nucleotide Polymorphisms Associated with Brown Rust Resistance, α-Amylase Activity and Pre-harvest Sprouting in Rye (Secale cereale L.)

(2017) Monika Rakoczy-Trojanowska et al.   PLANT MOLECULAR BIOLOGY REPORTER

Geographical distribution of genetic diversity in Secale landrace and wild accessions

(2016) Jenny Hagenblad et al.   BMC PLANT BIOLOGY

How did the domestication of Fertile Crescent grain crops increase their yields?

(2016) Catherine Preece et al.   FUNCTIONAL ECOLOGY

The application of GBS markers for extending the dense genetic map of rye (Secale cereale L.) and the localization of the Rfc1 gene restoring male fertility in plants with the C source of sterility-inducing cytoplasm

(2016) Paweł Milczarski et al.   JOURNAL OF APPLIED GENETICS

Geography and end use drive the diversification of worldwide winter rye populations

(2016) Florence Parat et al.   MOLECULAR ECOLOGY

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation

(2016) Joanne Russell et al.   NATURE GENETICS

A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits

(2015) Huihui Li et al.   BMC GENOMICS

Bulbosum to Go: A Toolbox to Utilize Hordeum vulgare / bulbosum Introgressions for Breeding and Beyond

(2015) Neele Wendler et al.   Molecular Plant

GBIS: the information system of the German Genebank

(2015) Markus Oppermann et al.   Database-The Journal of Biological Databases and Curation

A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes

(2015) Katherine W Jordan et al.   GENOME BIOLOGY

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

(2015) Jarrod A Chapman et al.   GENOME BIOLOGY

e!DAL - a framework to store, share and publish research data

(2014) Daniel Arend et al.   BMC BIOINFORMATICS

Evolutionary History of Wild Barley (Hordeum vulgare subsp. spontaneum) Analyzed Using Multilocus Sequence Data and Paleodistribution Modeling

(2014) Sabine S. Jakob et al.   Genome Biology and Evolution

Unlocking the secondary gene-pool of barley with next-generation sequencing

(2014) Neele Wendler et al.   PLANT BIOTECHNOLOGY JOURNAL

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

Vavilovian Mimicry: Nikolai Vavilov and His Little-Known Impact on Weed Science

(2014) J. Scott McElroy   WEED SCIENCE

Estimating and interpreting FST: The impact of rare variants

(2013) G. Bhatia et al.   GENOME RESEARCH

On the ‘lost’ crops of the neolithic Near East

(2013) Shahal Abbo et al.   JOURNAL OF EXPERIMENTAL BOTANY

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

Application of Genotyping-by-Sequencing on Semiconductor Sequencing Platforms: A Comparison of Genetic and Reference-Based Marker Ordering in Barley

(2013) Martin Mascher et al.   PLoS One

Inferring Demographic History from a Spectrum of Shared Haplotype Lengths

(2013) Kelley Harris et al.   PLoS Genetics

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

The effect of RAD allele dropout on the estimation of genetic variation within and between populations

(2012) Mathieu Gautier et al.   MOLECULAR ECOLOGY

Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly

(2012) Ernest T Lam et al.   NATURE BIOTECHNOLOGY

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.)

(2011) Grit Haseneyer et al.   BMC PLANT BIOLOGY

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

STRUCTURAL HETEROZYGOSITY IN SECALE KUPRIJANOVII

(2010) N. J. HRISHI et al.   HEREDITAS

Barley doubled-haploid production by uniparental chromosome elimination

(2010) Andreas Houben et al.   PLANT CELL TISSUE AND ORGAN CULTURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Reconstructing Indian population history

(2009) David Reich et al.   NATURE