Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome

Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived

(2018) Yue Hao et al.   Genome Biology and Evolution

The genetic architecture of genome-wide recombination rate variation in allopolyploid wheat revealed by nested association mapping

(2018) Katherine W. Jordan et al.   PLANT JOURNAL

N.I. Vavilov’s theory of centres of diversity in the light of current understanding of wheat diversity, domestication and evolution

(2018) J. Dvorak et al.   Czech Journal of Genetics and Plant Breeding

Maize domestication and gene interaction

(2018) Michelle C. Stitzer et al.   NEW PHYTOLOGIST

Shifting the limits in wheat research and breeding using a fully annotated reference genome

(2018) et al.   SCIENCE

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

(2017) Ming-Cheng Luo et al.   NATURE

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

(2017) Jarkko Salojärvi et al.   NATURE GENETICS

Cassava haplotype map highlights fixation of deleterious mutations during clonal propagation

(2017) Punna Ramu et al.   NATURE GENETICS

Uncovering hidden variation in polyploid wheat

(2017) Ksenia V. Krasileva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome diversity of tuber-bearingSolanumuncovers complex evolutionary history and targets of domestication in the cultivated potato

(2017) Michael A. Hardigan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication

(2017) Raz Avni et al.   SCIENCE

Direct Determination of the Mutation Rate in the Bumblebee Reveals Evidence for Weak Recombination-Associated Mutation and an Approximate Rate Constancy in Insects

(2016) Haoxuan Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Role of Deleterious Substitutions in Crop Genomes

(2016) Thomas J. Y. Kono et al.   MOLECULAR BIOLOGY AND EVOLUTION

Plant Nitrogen Acquisition Under Low Availability: Regulation of Uptake and Root Architecture

(2016) Takatoshi Kiba et al.   PLANT AND CELL PHYSIOLOGY

QTLs for uniform grain dimensions and germination selected during wheat domestication are co-located on chromosome 4B

(2016) Moran Nave et al.   THEORETICAL AND APPLIED GENETICS

Sedimentary DNA from a submerged site reveals wheat in the British Isles 8000 years ago

(2015) Oliver Smith et al.   SCIENCE

The Effects of Both Recent and Long-Term Selection and Genetic Drift Are Readily Evident in North American Barley Breeding Populations

(2015) Ana M. Poets et al.   G3-Genes Genomes Genetics

A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes

(2015) Katherine W Jordan et al.   GENOME BIOLOGY

Partitioning Heritability of Regulatory and Cell-Type-Specific Variants across 11 Common Diseases

(2014) Alexander Gusev et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array

(2014) Shichen Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Application of T-DNA activation tagging to identify glutamate receptor-like genes that enhance drought tolerance in plants

(2014) Guihua Lu et al.   PLANT CELL REPORTS

Structural and functional partitioning of bread wheat chromosome 3B

(2014) F. Choulet et al.   SCIENCE

Do Heliconius butterfly species exchange mimicry alleles?

(2013) J. Smith et al.   Biology Letters

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Improving the Accuracy and Efficiency of Identity-by-Descent Detection in Population Data

(2013) B. L. Browning et al.   GENETICS

Glutamate signalling in roots

(2013) Brian G. Forde   JOURNAL OF EXPERIMENTAL BOTANY

Draft genome of the wheat A-genome progenitor Triticum urartu

(2013) Hong-Qing Ling et al.   NATURE

Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars

(2013) C. R. Cavanagh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Pattern and Distribution of Deleterious Mutations in Maize

(2013) Sofiane Mezmouk et al.   G3-Genes Genomes Genetics

The Genomic Signature of Crop-Wild Introgression in Maize

(2013) Matthew B. Hufford et al.   PLoS Genetics

BEDOPS: high-performance genomic feature operations

(2012) Shane Neph et al.   BIOINFORMATICS

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Islands and streams: clusters and gene flow in wild barley populations from the Levant

(2012) SARIEL HÜBNER et al.   MOLECULAR ECOLOGY

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes

(2011) Eduard D Akhunov et al.   BMC GENOMICS

Genetic analysis of wheat domestication and evolution under domestication

(2011) Zvi Peleg et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome partitioning of genetic variation for complex traits using common SNPs

(2011) Jian Yang et al.   NATURE GENETICS

Crop genomics: advances and applications

(2011) Peter L. Morrell et al.   NATURE REVIEWS GENETICS

SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants

(2011) G. De Baets et al.   NUCLEIC ACIDS RESEARCH

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Homoeolog-specific transcriptional bias in allopolyploid wheat

(2010) Alina R Akhunova et al.   BMC GENOMICS

Geographic distribution and domestication of wild emmer wheat (Triticum dicoccoides)

(2010) Hakan Özkan et al.   GENETIC RESOURCES AND CROP EVOLUTION

Population differentiation as a test for selective sweeps

(2010) H. Chen et al.   GENOME RESEARCH

Understanding plant response to nitrogen limitation for the improvement of crop nitrogen use efficiency

(2010) S. Kant et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects

(2008) Reiner A. Veitia et al.   TRENDS IN GENETICS