标题
Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
作者
关键词
-
出版物
Communications Biology
Volume 4, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-01-26
DOI
10.1038/s42003-020-01626-5
参考文献
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- (2019) Eduardo Abreo et al. Scientific Reports
- Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7
- (2019) Vijay K. Sharma et al. BMC GENOMICS
- Gene duplications in the E. coli genome: common themes among pathotypes
- (2019) Manuel Bernabeu et al. BMC GENOMICS
- Characterisation and rapid identification of phylogroup G in Escherichia coli, a lineage with high virulence and antibiotic resistance potential
- (2019) Olivier Clermont et al. ENVIRONMENTAL MICROBIOLOGY
- Stratified reconstruction of ancestral Escherichia coli diversification
- (2019) José Maria Gonzalez-Alba et al. BMC GENOMICS
- The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
- (2019) Zhemin Zhou et al. GENOME RESEARCH
- Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates
- (2017) Matthew R. Olm et al. GENOME RESEARCH
- Environmental Escherichia coli : ecology and public health implications-a review
- (2017) J. Jang et al. JOURNAL OF APPLIED MICROBIOLOGY
- Why Might Bacterial Pathogens Have Small Genomes?
- (2017) Lucy A. Weinert et al. TRENDS IN ECOLOGY & EVOLUTION
- Identification of Escherichia coli and Shigella Species from Whole-Genome Sequences
- (2016) Marie A. Chattaway et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Phylogenetic diversity, antimicrobial susceptibility and virulence characteristics of phylogroup F Escherichia coli in Australia
- (2016) Belinda Vangchhia et al. MICROBIOLOGY-SGM
- Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
- (2016) Alice R. Wattam et al. NUCLEIC ACIDS RESEARCH
- Analysis of the core genome and pangenome of P seudomonas putida
- (2015) Zulema Udaondo et al. ENVIRONMENTAL MICROBIOLOGY
- High Recombinant Frequency in Extraintestinal PathogenicEscherichia coliStrains
- (2015) Jerónimo Rodríguez-Beltrán et al. MOLECULAR BIOLOGY AND EVOLUTION
- Impermanence of bacterial clones
- (2015) Louis-Marie Bobay et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
- (2015) Jan P Meier-Kolthoff et al. Standards in Genomic Sciences
- Quality scores for 32,000 genomes
- (2015) Miriam L Land et al. Standards in Genomic Sciences
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Escherichia coli ST131, an Intriguing Clonal Group
- (2014) M.-H. Nicolas-Chanoine et al. CLINICAL MICROBIOLOGY REVIEWS
- Large-scale genomic sequencing of extraintestinal pathogenicEscherichia colistrains
- (2014) Stephen J. Salipante et al. GENOME RESEARCH
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Global dissemination of a multidrug resistant Escherichia coli clone
- (2014) N. K. Petty et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Evolutionary Path to Extraintestinal Pathogenic, Drug-Resistant Escherichia coli Is Marked by Drastic Reduction in Detectable Recombination within the Core Genome
- (2013) Alan McNally et al. Genome Biology and Evolution
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Variation in endogenous oxidative stress in Escherichia coli natural isolates during growth in urine
- (2012) Cecile Aubron et al. BMC MICROBIOLOGY
- The ClermontEscherichia coliphylo-typing method revisited: improvement of specificity and detection of new phylo-groups
- (2012) Olivier Clermont et al. Environmental Microbiology Reports
- BIGSdb: Scalable analysis of bacterial genome variation at the population level
- (2011) Keith A Jolley et al. BMC BIOINFORMATICS
- Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs)
- (2011) G. E. Sims et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
- (2010) M. Csuos BIOINFORMATICS
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Escherichia coli phylogenetic group determination and its application in the identification of the major animal source of fecal contamination
- (2010) Camila Carlos et al. BMC MICROBIOLOGY
- The population genetics of commensal Escherichia coli
- (2010) Olivier Tenaillon et al. NATURE REVIEWS MICROBIOLOGY
- Etiology of Diarrhea in Older Children, Adolescents and Adults: A Systematic Review
- (2010) Christa L. Fischer Walker et al. PLoS Neglected Tropical Diseases
- Cryptic Lineages of the Genus Escherichia
- (2009) S. T. Walk et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Streamlining and Large Ancestral Genomes in Archaea Inferred with a Phylogenetic Birth-and-Death Model
- (2009) M. Csuros et al. MOLECULAR BIOLOGY AND EVOLUTION
- Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method
- (2008) David M. Gordon et al. ENVIRONMENTAL MICROBIOLOGY
- The Temporal Dynamics of Slightly Deleterious Mutations in Escherichia coli and Shigella spp.
- (2008) K. J. Balbi et al. MOLECULAR BIOLOGY AND EVOLUTION
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