The ClermontEscherichia coliphylo-typing method revisited: improvement of specificity and detection of new phylo-groups

The evolution of the Escherichia coli phylogeny

(2012) Roy R. Chaudhuri et al.   INFECTION GENETICS AND EVOLUTION

Improved Multiplex PCR Strategy for Rapid Assignment of the Four Major Escherichia coli Phylogenetic Groups

(2012) M. Doumith et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Characterization of the cryptic Escherichia lineages: rapid identification and prevalence

(2011) Olivier Clermont et al.   ENVIRONMENTAL MICROBIOLOGY

Animal and human pathogenic Escherichia coli strains share common genetic backgrounds

(2011) Olivier Clermont et al.   INFECTION GENETICS AND EVOLUTION

Unusual Genotype of a Uropathogenic Escherichia coli Strain Assigned to the B2 Phylogenetic Group

(2011) N. Mendonca et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species

(2011) C. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

aes, the gene encoding the esterase B in Escherichia coli, is a powerful phylogenetic marker of the species

(2010) Mathilde Lescat et al.   BMC MICROBIOLOGY

Meningitis Caused by Escherichia coli Producing TEM-52 Extended-Spectrum  -Lactamase within an Extensive Outbreak in a Neonatal Ward: Epidemiological Investigation and Characterization of the Strain

(2010) D. Moissenet et al.   JOURNAL OF CLINICAL MICROBIOLOGY

The population genetics of commensal Escherichia coli

(2010) Olivier Tenaillon et al.   NATURE REVIEWS MICROBIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Cryptic Lineages of the Genus Escherichia

(2009) S. T. Walk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains

(2008) Françoise Jaureguy et al.   BMC GENOMICS

Evidence for a human-specific Escherichia coli clone

(2008) Olivier Clermont et al.   ENVIRONMENTAL MICROBIOLOGY

Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method

(2008) David M. Gordon et al.   ENVIRONMENTAL MICROBIOLOGY