Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7

Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B

(2017) Maria Borowiak et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Genome amplification and promoter mutation expand the range of csgD-dependent biofilm responses in an STEC population

(2017) Gaylen A Uhlich et al.   MICROBIOLOGY-SGM

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

(2017) Claire Bertelli et al.   NUCLEIC ACIDS RESEARCH

DNA Backbone Sulfur-Modification Expands Microbial Growth Range under Multiple Stresses by its anti-oxidation function

(2017) Yan Yang et al.   Scientific Reports

Curli fimbriae are conditionally required in Escherichia coli O157:H7 for initial attachment and biofilm formation

(2016) Michelle Qiu Carter et al.   FOOD MICROBIOLOGY

Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study

(2016) Yi-Yun Liu et al.   LANCET INFECTIOUS DISEASES

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Contributions of EspA Filaments and Curli Fimbriae in Cellular Adherence and Biofilm Formation of Enterohemorrhagic Escherichia coli O157:H7

(2016) Vijay K. Sharma et al.   PLoS One

Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033

(2015) Canying Liu et al.   BMC GENOMICS

The dnd operon for DNA phosphorothioation modification system in Escherichia coli is located in diverse genomic islands

(2015) Wing Sze Ho et al.   BMC GENOMICS

Escherichia coliO157:H7 Lacking theqseBC-Encoded Quorum-Sensing System Outcompetes the Parental Strain in Colonization of Cattle Intestines

(2014) V. K. Sharma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multilocus genotypic characterization of Escherichia coli O157:H7 recovered from food sources

(2014) M. M. ELHADIDY et al.   EPIDEMIOLOGY AND INFECTION

Natural rpoS mutations contribute to population heterogeneity in Escherichia coli O157:H7 strains linked to the 2006 US spinach-associated outbreak

(2014) Michelle Qiu Carter et al.   FOOD MICROBIOLOGY

Global Incidence of Human Shiga Toxin–Producing Escherichia coli Infections and Deaths: A Systematic Review and Knowledge Synthesis

(2014) Shannon E. Majowicz et al.   Foodborne Pathogens and Disease

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hha Controls Escherichia coli O157:H7 Biofilm Formation by Differential Regulation of Global Transcriptional Regulators FlhDC and CsgD

(2013) Vijay K. Sharma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lineage and Genogroup-Defining Single Nucleotide Polymorphisms of Escherichia coli O157:H7

(2013) Woo Kyung Jung et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multilocus Genotype Analysis of Escherichia coli O157 Isolates from Australia and the United States Provides Evidence of Geographic Divergence

(2013) G. E. Mellor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SdiA Aids Enterohemorrhagic Escherichia coli Carriage by Cattle Fed a Forage or Grain Diet

(2013) Haiqing Sheng et al.   INFECTION AND IMMUNITY

Role of curli and plant cultivation conditions on Escherichia coli O157:H7 internalization into spinach grown on hydroponics and in soil

(2013) Dumitru Macarisin et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Phage insertion in mlrA and variations in rpoS limit curli expression and biofilm formation in Escherichia coli serotype O157 : H7

(2013) G. A. Uhlich et al.   MICROBIOLOGY-SGM

RcsB Contributes to the Distinct Stress Fitness among Escherichia coli O157:H7 Curli Variants of the 1993 Hamburger-Associated Outbreak Strains

(2012) Michelle Q. Carter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Role of Curli and Cellulose Expression in Adherence of Escherichia coli O157:H7 to Spinach Leaves

(2012) Dumitru Macarisin et al.   Foodborne Pathogens and Disease

A Novel Target of IscS in Escherichia coli: Participating in DNA Phosphorothioation

(2012) Xianhui An et al.   PLoS One

Carriage of stx2a Differentiates Clinical and Bovine-Biased Strains of Escherichia coli O157

(2012) Smriti Shringi et al.   PLoS One

Distinct Acid Resistance and Survival Fitness Displayed by Curli Variants of Enterohemorrhagic Escherichia coli O157:H7

(2011) Michelle Q. Carter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distinct Transcriptional Profiles and Phenotypes Exhibited by Escherichia coli O157:H7 Isolates Related to the 2006 Spinach-Associated Outbreak

(2011) Craig T. Parker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome Signatures of Escherichia coli O157:H7 Isolates from the Bovine Host Reservoir

(2011) Mark Eppinger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC)

(2011) Elzbieta Brzuszkiewicz et al.   ARCHIVES OF MICROBIOLOGY

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

DNA phosphorothioation is widespread and quantized in bacterial genomes

(2011) L. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic anatomy of Escherichia coli O157:H7 outbreaks

(2011) M. Eppinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A novel host-specific restriction system associated with DNA backbone S-modification in Salmonella

(2010) Tiegang Xu et al.   NUCLEIC ACIDS RESEARCH

Derivation of Escherichia coli O157:H7 from Its O55:H7 Precursor

(2010) Zhemin Zhou et al.   PLoS One

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hyper-virulence

(2009) Chad R Laing et al.   BMC GENOMICS

Molecular characterization of Verocytotoxigenic Escherichia coli O157:H7 isolates from Argentina by Multiple-Loci VNTR Analysis (MLVA)

(2009) Ana V. Bustamante et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Prediction of pathogenicity islands in EnterohemorrhagicEscherichia coliO157:H7 using genomic barcodes

(2009) Guoqing Wang et al.   FEBS LETTERS

Analysis of the Genome of the Escherichia coli O157:H7 2006 Spinach-Associated Outbreak Isolate Indicates Candidate Genes That May Enhance Virulence

(2009) B. R. Kulasekara et al.   INFECTION AND IMMUNITY

Genomic Instability in Regions Adjacent to a Highly Conserved pch Prophage in Escherichia coli O157:H7 Generates Diversity in Expression Patterns of the LEE Pathogenicity Island

(2009) Z. Yang et al.   JOURNAL OF BACTERIOLOGY

dndDB: A Database Focused on Phosphorothioation of the DNA Backbone

(2009) Hong-Yu Ou et al.   PLoS One

Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli

(2009) Y. Ogura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genotypic Characterization and Prevalence of Virulence Factors among Canadian Escherichia coli O157:H7 Strains

(2008) K. Ziebell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Database indexing for production MegaBLAST searches

(2008) Aleksandr Morgulis et al.   BIOINFORMATICS

An investigation of the expression and adhesin function of H7 flagella in the interaction ofEscherichia coliO157 : H7 with bovine intestinal epithelium

(2008) Arvind Mahajan et al.   CELLULAR MICROBIOLOGY

Acyl-Homoserine-Lactone Autoinducer in the Gastrointesinal Tract of Feedlot Cattle and Correlation to Season, E. Coli O157:H7 Prevalence, and Diet

(2008) T. S. Edrington et al.   CURRENT MICROBIOLOGY

Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks

(2008) S. D. Manning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA