Phylogenetic diversity, antimicrobial susceptibility and virulence characteristics of phylogroup F Escherichia coli in Australia

Genetic Structure and Antimicrobial Resistance of Escherichia coli and Cryptic Clades in Birds with Diverse Human Associations

(2015) Michaela D. J. Blyton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Antibiotic resistance: are we all doomed?

(2015) P. Collignon   INTERNAL MEDICINE JOURNAL

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data

(2015) Katrine G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Human-associated fluoroquinolone-resistant Escherichia coli clonal lineages, including ST354, isolated from canine feces and extraintestinal infections in Australia

(2015) SiYu Guo et al.   MICROBES AND INFECTION

Escherichia colidiversity in the lower intestinal tract of humans

(2015) David M. Gordon et al.   Environmental Microbiology Reports

First detection of extended-spectrum cephalosporin- and fluoroquinolone-resistant Escherichia coli in Australian food-producing animals

(2015) Sam Abraham et al.   Journal of Global Antimicrobial Resistance

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Pandemic lineages of extraintestinal pathogenic Escherichia coli

(2014) L.W. Riley   CLINICAL MICROBIOLOGY AND INFECTION

Phylogenetic and molecular insights into the evolution of multidrug-resistant porcine enterotoxigenic Escherichia coli in Australia

(2014) Sam Abraham et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

CTX-M-15-D-ST648 Escherichia coli from companion animals and horses: another pandemic clone combining multiresistance and extraintestinal virulence?

(2014) C. Ewers et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Detection of CTX-M-15-producingEscherichia coliisolates of lineages ST410-A, ST617-A and ST354-D in faecal samples of hospitalized patients in a Mauritanian hospital

(2014) Rym Ben Sallem et al.   JOURNAL OF CHEMOTHERAPY

Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

(2014) K. G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Sex-dependent competitive dominance of phylogenetic group B2Escherichia colistrains within human hosts

(2014) Michaela D. J. Blyton et al.   Environmental Microbiology Reports

The Clonal Distribution and Diversity of Extraintestinal Escherichia coli Isolates Vary According to Patient Characteristics

(2013) Ritu Banerjee et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Escherichia coli Sequence Type 131 Is a Dominant, Antimicrobial-Resistant Clonal Group Associated with Healthcare and Elderly Hosts

(2013) Ritu Banerjee et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Salmonella enterica isolated from infections in Australian livestock remain susceptible to critical antimicrobials

(2013) Sam Abraham et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Predictive Diagnostics for Escherichia coli Infections Based on the Clonal Association of Antimicrobial Resistance and Clinical Outcome

(2013) V. Tchesnokova et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Co-selection may explain high rates of ciprofloxacin non-susceptible Escherichia coli from retail poultry reared without prior fluoroquinolone exposure

(2013) P. R. Ingram et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

The ClermontEscherichia coliphylo-typing method revisited: improvement of specificity and detection of new phylo-groups

(2012) Olivier Clermont et al.   Environmental Microbiology Reports

The population genetics of commensal Escherichia coli

(2010) Olivier Tenaillon et al.   NATURE REVIEWS MICROBIOLOGY

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Major Uropathogenic Escherichia coli Strain Isolated in the Northwest of England Identified by Multilocus Sequence Typing

(2008) S. H. Lau et al.   JOURNAL OF CLINICAL MICROBIOLOGY