Metabarcoding of zooplankton diversity within the Chukchi Borderland, Arctic Ocean: improved resolution from multi-gene markers and region-specific DNA databases

Large-scale metabarcoding analysis of epipelagic and mesopelagic copepods in the Pacific

(2020) Junya Hirai et al.   PLoS One

DNA metabarcoding and morphological analysis - Assessment of zooplankton biodiversity in transitional waters

(2020) Anna Schroeder et al.   MARINE ENVIRONMENTAL RESEARCH

Multi-locus DNA metabarcoding of zooplankton communities and scat reveal trophic interactions of a generalist predator

(2019) E. L. Carroll et al.   Scientific Reports

Multilocus phylogeny, species delimitation and biogeography of Iberian valvatiform springsnails (Caenogastropoda: Hydrobiidae), with the description of a new genus

(2019) Diana Delicado et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Cross-shelf structure and distribution of mesozooplankton communities in the East-Siberian Sea and the adjacent Arctic Ocean

(2019) E. A. Ershova et al.   POLAR BIOLOGY

Current practice in plankton metabarcoding: optimization and error management

(2019) Luciana F Santoferrara   JOURNAL OF PLANKTON RESEARCH

Abundance, biomass and community structure of epipelagic zooplankton in the Canada Basin

(2018) Imme Rutzen et al.   JOURNAL OF PLANKTON RESEARCH

Evaluation of marine zooplankton community structure through environmental DNA metabarcoding

(2018) Anni Djurhuus et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inter-annual variation of the summer zooplankton community in the Chukchi Sea: spatial heterogeneity during a decade of rapid ice decline

(2018) Zhiqiang Xu et al.   POLAR BIOLOGY

Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity

(2018) David López-Escardó et al.   Scientific Reports

Metabarcoding using multiplexed markers increases species detection in complex zooplankton communities

(2018) Guang K. Zhang et al.   Evolutionary Applications

Multi-marker metabarcoding approach to study mesozooplankton at basin scale

(2018) Sergio Stefanni et al.   Scientific Reports

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Molecular phylogeny of the genus Themisto (Guérin, 1925) (Amphipoda: Hyperiidae) in the Northern Hemisphere

(2017) Astrid Tempestini et al.   JOURNAL OF CRUSTACEAN BIOLOGY

18S V9 metabarcoding correctly depicts plankton estuarine community drivers

(2017) D Abad et al.   MARINE ECOLOGY PROGRESS SERIES

Vertical gradients in species richness and community composition across the twilight zone in the North Pacific Subtropical Gyre

(2017) Stephanie A. Sommer et al.   MOLECULAR ECOLOGY

Global phylogeography of Oithona similis s.l. (Crustacea, Copepoda, Oithonidae) – A cosmopolitan plankton species or a complex of cryptic lineages?

(2017) Astrid Cornils et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Effect of marker choice and thermal cycling protocol on zooplankton DNA metabarcoding studies

(2017) Laurence J. Clarke et al.   Ecology and Evolution

18S V9 metabarcoding correctly depicts plankton estuarine community drivers

(2017) D Abad et al.   MARINE ECOLOGY PROGRESS SERIES

One tunic but more than one barcode: evolutionary insights from dynamic mitochondrial DNA inSalpa thompsoni(Tunicata: Salpida)

(2016) William P. Goodall-Copestake   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Metabarcoding reveals strong spatial structure and temporal turnover of zooplankton communities among marine and freshwater ports

(2016) Frédéric J. J. Chain et al.   DIVERSITY AND DISTRIBUTIONS

Cross-shelf gradients of epipelagic zooplankton communities of the Beaufort Sea and the influence of localized hydrographic features

(2016) Caitlin A. Smoot et al.   JOURNAL OF PLANKTON RESEARCH

Depth-stratified community structure of Beaufort Sea slope zooplankton and its relations to water masses

(2016) Caitlin A. Smoot et al.   JOURNAL OF PLANKTON RESEARCH

Metabarcoding of marine zooplankton: prospects, progress and pitfalls

(2016) Ann Bucklin et al.   JOURNAL OF PLANKTON RESEARCH

Identification, Discrimination, and Discovery of Species of Marine Planktonic Ostracods Using DNA Barcodes

(2016) Lisa M. Nigro et al.   PLoS One

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Unreliable quantitation of species abundance based on high-throughput sequencing data of zooplankton communities

(2015) C Sun et al.   Aquatic Biology

Protist diversity along a salinity gradient in a coastal lagoon

(2015) S Balzano et al.   AQUATIC MICROBIAL ECOLOGY

Effects of plankton net characteristics on metagenetic community analysis of metazoan zooplankton in a coastal marine ecosystem

(2015) Junya Hirai et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Metagenetic tools for the census of marine meiofaunal biodiversity: An overview

(2015) Laura Carugati et al.   Marine Genomics

Comparative study of the validity of three regions of the 18S-rRNA gene for massively parallel sequencing-based monitoring of the planktonic eukaryote community

(2015) Akifumi S. Tanabe et al.   Molecular Ecology Resources

Inter-annual variability of summer mesozooplankton communities of the western Chukchi Sea: 2004–2012

(2015) Elizaveta A. Ershova et al.   POLAR BIOLOGY

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities?

(2015) Emily A. Brown et al.   Ecology and Evolution

Metabarcoding Is Powerful yet Still Blind: A Comparative Analysis of Morphological and Molecular Surveys of Seagrass Communities

(2015) Dominique A. Cowart et al.   PLoS One

Taxonomic Resolutions Based on 18S rRNA Genes: A Case Study of Subclass Copepoda

(2015) Shu Wu et al.   PLoS One

A metagenetic approach for revealing community structure of marine planktonic copepods

(2014) J. Hirai et al.   Molecular Ecology Resources

From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity

(2014) Melania E. Cristescu   TRENDS IN ECOLOGY & EVOLUTION

Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies

(2013) Anne Chao et al.   ECOLOGICAL MONOGRAPHS

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

(2013) Penelope K. Lindeque et al.   PLoS One

Seasonal and interannual variation in the planktonic communities of the northeastern Chukchi Sea during the summer and early fall

(2012) Jennifer M. Questel et al.   CONTINENTAL SHELF RESEARCH

Vertical distribution of mesozooplankton in the coastal Canadian Beaufort Sea in summer

(2012) Wojciech Walkusz et al.   JOURNAL OF MARINE SYSTEMS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Barriers in the pelagic: population structuring of Calanus helgolandicus and C. euxinus in ­European waters

(2011) L Yebra et al.   MARINE ECOLOGY PROGRESS SERIES

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

Impact of Wind-Driven Mixing in the Arctic Ocean

(2011) Luc Rainville et al.   OCEANOGRAPHY

The Changing Arctic Sea Ice Cover

(2011) Donald Perovich   OCEANOGRAPHY

DNA Barcoding of Marine Metazoa

(2010) Ann Bucklin et al.   Annual Review of Marine Science

Deep-sea sampling on CMarZ cruises in the Atlantic Ocean – an Introduction

(2010) Peter H. Wiebe et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Genetic diversity and cryptic speciation of the deep sea chaetognath Caecosagitta macrocephala (Fowler, 1904)

(2010) Hiroomi Miyamoto et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Bacterial vs. zooplankton control of sinking particle flux in the ocean's twilight zone

(2010) Deborah K. Steinberg et al.   LIMNOLOGY AND OCEANOGRAPHY

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

Poles Apart: The “Bipolar” Pteropod Species Limacina helicina Is Genetically Distinct Between the Arctic and Antarctic Oceans

(2010) Brian Hunt et al.   PLoS One

Use of ITS2 Region as the Universal DNA Barcode for Plants and Animals

(2010) Hui Yao et al.   PLoS One

Patterns of zooplankton diversity through the depths of the Arctic’s central basins

(2010) Ksenia N. Kosobokova et al.   Marine Biodiversity

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and vertical distribution of mesozooplankton in the Arctic's Canada Basin

(2009) Ksenia N. Kosobokova et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

DNA barcoding of Arctic Ocean holozooplankton for species identification and recognition

(2009) Ann Bucklin et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Zooplankton community patterns in the Chukchi Sea during summer 2004

(2009) Russell R. Hopcroft et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Genetic analysis reveals multiple cryptic invasive species of the hydrozoan genus Cordylophora

(2008) Nadine C. Folino-Rorem et al.   BIOLOGICAL INVASIONS

Pan-Vertebrate Toll-Like Receptors During Evolution

(2008) Hiroyuki Oshiumi et al.   CURRENT GENOMICS

In hot water: zooplankton and climate change

(2008) A. J. Richardson   ICES JOURNAL OF MARINE SCIENCE

Sea ice and the onshore–offshore gradient in pre-winter zooplankton assemblages in southeastern Beaufort Sea

(2007) Gérald Darnis et al.   JOURNAL OF MARINE SYSTEMS