标题
Taxonomic Resolutions Based on 18S rRNA Genes: A Case Study of Subclass Copepoda
作者
关键词
Ribosomal RNA, Taxonomy, Sequence alignment, Copepods, Sequence analysis, Sequence databases, Sequence similarity searching, Biodiversity
出版物
PLoS One
Volume 10, Issue 6, Pages e0131498
出版商
Public Library of Science (PLoS)
发表日期
2015-06-25
DOI
10.1371/journal.pone.0131498
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Cryptic species of hairworm parasites revealed by molecular data and crowdsourcing of specimen collections
- (2015) Ben Hanelt et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Investigating Microbial Eukaryotic Diversity from a Global Census: Insights from a Comparison of Pyrotag and Full-Length Sequences of 18S rRNA Genes
- (2014) Alle A. Y. Lie et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes
- (2014) Vera G. Fonseca et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Sequence-Based Optimization of a Quantitative Real-Time PCR Assay for Detection of Plasmodium ovale and Plasmodium malariae
- (2014) M. Phuong et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Secondary Structures of rRNAs from All Three Domains of Life
- (2014) Anton S. Petrov et al. PLoS One
- Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers
- (2014) Kenan Hadziavdic et al. PLoS One
- Reproducibility of pyrosequencing data for biodiversity assessment in complex communities
- (2014) Aibin Zhan et al. Methods in Ecology and Evolution
- From Genus to Phylum: Large-Subunit and Internal Transcribed Spacer rRNA Operon Regions Show Similar Classification Accuracies Influenced by Database Composition
- (2013) Andrea Porras-Alfaro et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A general species delimitation method with applications to phylogenetic placements
- (2013) Jiajie Zhang et al. BIOINFORMATICS
- Eukaryotic diversity in premise drinking water using 18S rDNA sequencing: implications for health risks
- (2013) Helen Y. Buse et al. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
- Comparison of molecular species identification for North Sea calanoid copepods (Crustacea) using proteome fingerprints and DNA sequences
- (2013) S. Laakmann et al. Molecular Ecology Resources
- Phylogeny of the Paracalanidae Giesbrecht, 1888 (Crustacea: Copepoda: Calanoida)
- (2013) Astrid Cornils et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- New Metrics for Comparison of Taxonomies Reveal Striking Discrepancies among Species Delimitation Methods in Madascincus Lizards
- (2013) Aurélien Miralles et al. PLoS One
- Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages
- (2013) Penelope K. Lindeque et al. PLoS One
- DNA Barcoding and Species Boundary Delimitation of Selected Species of Chinese Acridoidea (Orthoptera: Caelifera)
- (2013) Jianhua Huang et al. PLoS One
- Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets
- (2013) Tomochika Fujisawa et al. SYSTEMATIC BIOLOGY
- Additional lines of evidence provide new insights into species diversity of the Paphia subgenus Protapes (Mollusca, Bivalvia, Veneridae) in seas of south China
- (2013) Jun Chen et al. Marine Biodiversity
- First molecular data on the Western Australian Diacyclops (Copepoda, Cyclopoida) confirm morpho-species but question size differentiation and monophyly of the Alticola-group
- (2012) T. Karanovic et al. CRUSTACEANA
- Multi-locus species delimitation in closely related animals and fungi: one marker is not enough
- (2012) JULIAN R. DUPUIS et al. MOLECULAR ECOLOGY
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Overlooked cryptic endemism in copepods: Systematics and natural history of the calanoid subgenus Occidodiaptomus Borutzky 1991 (Copepoda, Calanoida, Diaptomidae)
- (2012) Federico Marrone et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Pushing short DNA fragments to the limit: Phylogenetic relationships of ‘hydrobioid’ gastropods (Caenogastropoda: Rissooidea)
- (2012) Thomas Wilke et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- DNA barcoding reveals both known and novel taxa in the Albitarsis Group (Anopheles: Nyssorhynchus) of Neotropical malaria vectors
- (2012) Freddy Ruiz-Lopez et al. Parasites & Vectors
- Identifying Insects with Incomplete DNA Barcode Libraries, African Fruit Flies (Diptera: Tephritidae) as a Test Case
- (2012) Massimiliano Virgilio et al. PLoS One
- Evaluating the Ribosomal Internal Transcribed Spacer (ITS) as a Candidate Dinoflagellate Barcode Marker
- (2012) Rowena F. Stern et al. PLoS One
- PCR Primers for Metazoan Nuclear 18S and 28S Ribosomal DNA Sequences
- (2012) Ryuji J. Machida et al. PLoS One
- The widely used small subunit 18S rDNA molecule greatly underestimates true diversity in biodiversity surveys of the meiofauna
- (2012) C. Q. Tang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Insights into the phylogeny of systematically controversial haptorian ciliates (Ciliophora, Litostomatea) based on multigene analyses
- (2012) Q. Zhang et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The Effect of Geographical Scale of Sampling on DNA Barcoding
- (2012) J. Bergsten et al. SYSTEMATIC BIOLOGY
- Molecules, morphology and minute hooded beetles: a phylogenetic study with implications for the evolution and classification of Corylophidae (Coleoptera: Cucujoidea)
- (2012) JAMES A. ROBERTSON et al. SYSTEMATIC ENTOMOLOGY
- Barcoding's next top model: an evaluation of nucleotide substitution models for specimen identification
- (2012) Rupert A. Collins et al. Methods in Ecology and Evolution
- Potential efficacy of mitochondrial genes for animal DNA barcoding: a case study using eutherian mammals
- (2011) Arong Luo et al. BMC GENOMICS
- DNA barcoding identifies Eimeria species and contributes to the phylogenetics of coccidian parasites (Eimeriorina, Apicomplexa, Alveolata)
- (2011) Joseph D. Ogedengbe et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
- Evolution of the bomolochiform superfamily complex (Copepoda: Cyclopoida): New insights from ssrDNA and morphology, and origin of umazuracolids from polychaete-infesting ancestors rejected
- (2011) Rony Huys et al. INTERNATIONAL JOURNAL FOR PARASITOLOGY
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- A fuzzy-set-theory-based approach to analyse species membership in DNA barcoding
- (2011) A.-B. ZHANG et al. MOLECULAR ECOLOGY
- Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences
- (2011) ROMINA GAZIS et al. MOLECULAR ECOLOGY
- ABGD, Automatic Barcode Gap Discovery for primary species delimitation
- (2011) N. PUILLANDRE et al. MOLECULAR ECOLOGY
- Molecular phylogeny of the Calanoida (Crustacea: Copepoda)
- (2011) Leocadio Blanco-Bercial et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Are similarity- or phylogeny-based methods more appropriate for classifying internal transcribed spacer (ITS) metagenomic amplicons?
- (2011) Teresita M. Porter et al. NEW PHYTOLOGIST
- Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level
- (2011) Manuela Krüger et al. NEW PHYTOLOGIST
- DNA barcoding of Scandinavian birds reveals divergent lineages in trans-Atlantic species
- (2010) Arild Johnsen et al. JOURNAL OF ORNITHOLOGY
- DNA-based association of adults and larvae in Baetidae (Ephemeroptera) with the description of a new genus Adnoptilum in Madagascar
- (2010) Jean-Luc Gattolliat et al. JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY
- An Alignment Confidence Score Capturing Robustness to Guide Tree Uncertainty
- (2010) O. Penn et al. MOLECULAR BIOLOGY AND EVOLUTION
- Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
- (2010) THORSTEN STOECK et al. MOLECULAR ECOLOGY
- Phylogeny of the freshwater copepod Mesocyclops (Crustacea: Cyclopidae) based on combined molecular and morphological data, with notes on biogeography
- (2010) Grace A. Wyngaard et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Using Population Genetic Theory and DNA Sequences for Species Detection and Identification in Asexual Organisms
- (2010) C. William Birky et al. PLoS One
- The Role of DNA Barcodes in Understanding and Conservation of Mammal Diversity in Southeast Asia
- (2010) Charles M. Francis et al. PLoS One
- Second-generation environmental sequencing unmasks marine metazoan biodiversity
- (2010) Vera G. Fonseca et al. Nature Communications
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships
- (2009) Björn M von Reumont et al. BMC EVOLUTIONARY BIOLOGY
- An SSU rDNA barcoding approach to the diversity of marine interstitial cercozoans, including descriptions of four novel genera and nine novel species
- (2009) C. Chantangsi et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- DNA barcode divergence among species and genera of birds and fishes
- (2009) ROBERT D. WARD Molecular Ecology Resources
- Nucleotide sequence heterogeneity in the small subunit ribosomal RNA gene within Theileria equi from horses in Sudan
- (2009) Bashir Salim et al. PARASITOLOGY RESEARCH
- Intra- or inter-specific difference in genotypes of Caligus elongatus Nordmann 1832?
- (2008) Øivind Øines et al. ACTA PARASITOLOGICA
- Molecular evolution of rDNA in early diverging Metazoa: First comparative analysis and phylogenetic application of complete SSU rRNA secondary structures in Porifera
- (2008) Oliver Voigt et al. BMC EVOLUTIONARY BIOLOGY
- Slow Mitochondrial COI Sequence Evolution at the Base of the Metazoan Tree and Its Implications for DNA Barcoding
- (2008) Danwei Huang et al. JOURNAL OF MOLECULAR EVOLUTION
- Cancrincolidae (Copepoda, Harpacticoida) associated with land crabs: A semiterrestrial leaf of the ameirid tree
- (2008) Rony Huys et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)
- (2008) Dongying Wu et al. PLoS One
- Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified
- (2008) H. Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now