The role of the microbiota in human genetic adaptation

Syntrophy via Interspecies H2 Transfer between Christensenella and Methanobrevibacter Underlies Their Global Cooccurrence in the Human Gut

(2020) Albane Ruaud et al.   mBio

The gut microbiota and Bergmann’s rule in wild house mice

(2020) Taichi A. Suzuki et al.   MOLECULAR ECOLOGY

Microbiota Depletion Impairs Thermogenesis of Brown Adipose Tissue and Browning of White Adipose Tissue

(2019) Baoguo Li et al.   Cell Reports

Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes

(2019) Angela C. Poole et al.   Cell Host & Microbe

Host genetic determinants of the gut microbiota of wild mice

(2019) Taichi A. Suzuki et al.   MOLECULAR ECOLOGY

Evolutionary and Ecological Consequences of Gut Microbial Communities

(2019) Nancy A. Moran et al.   Annual Review of Ecology Evolution and Systematics

Shifting Climates, Foods, and Diseases: The Human Microbiome through Evolution

(2019) Katherine R. Amato et al.   BIOESSAYS

Alcohol or Gut Microbiota: Who Is the Guilty?

(2019) Marica Meroni et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The role of multilevel selection in host microbiome evolution

(2019) Simon van Vliet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster

(2019) Seth M. Rudman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health

(2019) Jillian L. Waters et al.   BMC BIOLOGY

Human Gut Microbiota Predicts Susceptibility to Vibrio cholerae Infection

(2018) Firas S Midani et al.   JOURNAL OF INFECTIOUS DISEASES

Large-scale replicated field study of maize rhizosphere identifies heritable microbes

(2018) William A. Walters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probiotic strains detect and suppress cholera in mice

(2018) Ning Mao et al.   Science Translational Medicine

Human local adaptation of the TRPM8 cold receptor along a latitudinal cline

(2018) Felix M. Key et al.   PLoS Genetics

Of genes and microbes: solving the intricacies in host genomes

(2018) Jun Wang et al.   Protein & Cell

Parasite-Microbiota Interactions With the Vertebrate Gut: Synthesis Through an Ecological Lens

(2018) Jacqueline M. Leung et al.   Frontiers in Microbiology

The Gut Microbiome as a Major Regulator of the Gut-Skin Axis

(2018) Iman Salem et al.   Frontiers in Microbiology

Altitudinal variation of the gut microbiota in wild house mice

(2018) Taichi A. Suzuki et al.   MOLECULAR ECOLOGY

Is Host Filtering the Main Driver of Phylosymbiosis across the Tree of Life?

(2018) Florent Mazel et al.   mSystems

Microbial strain-level population structure and genetic diversity from metagenomes

(2017) Duy Tin Truong et al.   GENOME RESEARCH

Influence of diet on the gut microbiome and implications for human health

(2017) Rasnik K. Singh et al.   Journal of Translational Medicine

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

Cold-induced conversion of cholesterol to bile acids in mice shapes the gut microbiome and promotes adaptive thermogenesis

(2017) Anna Worthmann et al.   NATURE MEDICINE

Genetic signature of natural selection in first Americans

(2017) Carlos Eduardo G. Amorim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlations between gut microbiota community structures of Tibetans and geography

(2017) Daoliang Lan et al.   Scientific Reports

Diet, Environments, and Gut Microbiota. A Preliminary Investigation in Children Living in Rural and Urban Burkina Faso and Italy

(2017) Carlotta De Filippo et al.   Frontiers in Microbiology

The Human Microbiome and the Missing Heritability Problem

(2017) Santiago Sandoval-Motta et al.   Frontiers in Genetics

Dietary adaptation of FADS genes in Europe varied across time and geography

(2017) Kaixiong Ye et al.   Nature Ecology & Evolution

The gut microbiome in human immunodeficiency virus infection

(2016) Gili Zilberman-Schapira et al.   BMC Medicine

Genetic Determinants of the Gut Microbiome in UK Twins

(2016) Julia K. Goodrich et al.   Cell Host & Microbe

Altered Microbiota Contributes to Reduced Diet-Induced Obesity upon Cold Exposure

(2016) Marika Ziętak et al.   Cell Metabolism

Microbiome alterations in HIV infection a review

(2016) Brett Williams et al.   CELLULAR MICROBIOLOGY

Genetics of human origin and evolution: high-altitude adaptations

(2016) Abigail W Bigham   CURRENT OPINION IN GENETICS & DEVELOPMENT

Heritability and evolvability of fitness and nonfitness traits: Lessons from livestock

(2016) Ary A. Hoffmann et al.   EVOLUTION

Positive Selection on a Regulatory Insertion–Deletion Polymorphism inFADS2Influences Apparent Endogenous Synthesis of Arachidonic Acid

(2016) Kumar S. D. Kothapalli et al.   MOLECULAR BIOLOGY AND EVOLUTION

The effect of host genetics on the gut microbiome

(2016) Marc Jan Bonder et al.   NATURE GENETICS

Ion channels, ion channel receptors, and visceral hypersensitivity in irritable bowel syndrome

(2016) I. M. Fuentes et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Cospeciation of gut microbiota with hominids

(2016) A. H. Moeller et al.   SCIENCE

Going global by adapting local: A review of recent human adaptation

(2016) S. Fan et al.   SCIENCE

Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?

(2016) Antton Alberdi et al.   TRENDS IN ECOLOGY & EVOLUTION

Social behavior shapes the chimpanzee pan-microbiome

(2016) A. H. Moeller et al.   Science Advances

Ecophysiological consequences of alcoholism on human gut microbiota: implications for ethanol-related pathogenesis of colon cancer

(2016) Atsuki Tsuruya et al.   Scientific Reports

Selective sweep on human amylase genes postdates the split with Neanderthals

(2016) Charlotte E. Inchley et al.   Scientific Reports

Exploring Vertical Transmission of Bifidobacteria from Mother to Child

(2015) Christian Milani et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gut Microbiota Orchestrates Energy Homeostasis during Cold

(2015) Claire Chevalier et al.   CELL

Crosstalk between Microbiota-Derived Short-Chain Fatty Acids and Intestinal Epithelial HIF Augments Tissue Barrier Function

(2015) Caleb J. Kelly et al.   Cell Host & Microbe

Altitude Adaptation: A Glimpse Through Various Lenses

(2015) Tatum S. Simonson   HIGH ALTITUDE MEDICINE & BIOLOGY

Insights into hominin phenotypic and dietary evolution from ancient DNA sequence data

(2015) George H. Perry et al.   JOURNAL OF HUMAN EVOLUTION

Ability of the gut microbiota to produce PUFA-derived bacterial metabolites: Proof of concept in germ-free versus conventionalized mice

(2015) Céline Druart et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Strength in small numbers

(2015) S. Tishkoff   SCIENCE

Greenlandic Inuit show genetic signatures of diet and climate adaptation

(2015) M. Fumagalli et al.   SCIENCE

Adaptation to Lactose in Lactase Non Persistent People: Effects on Intolerance and the Relationship between Dairy Food Consumption and Evalution of Diseases

(2015) Andrew Szilagyi   Nutrients

Comparative analyses of fecal microbiota in Tibetan and Chinese Han living at low or high altitude by barcoded 454 pyrosequencing

(2015) Long Li et al.   Scientific Reports

The Hologenome Concept: Helpful or Hollow?

(2015) Nancy A. Moran et al.   PLOS BIOLOGY

Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes

(2015) Seth R. Bordenstein et al.   PLOS BIOLOGY

Social networks predict gut microbiome composition in wild baboons

(2015) Jenny Tung et al.   eLife

Genome-Wide Association Studies of the Human Gut Microbiota

(2015) Emily R. Davenport et al.   PLoS One

A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations

(2014) Florian J. Clemente et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Geographical variation of human gut microbial composition

(2014) T. A. Suzuki et al.   Biology Letters

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

Host genetics and parasitic infections

(2014) V.D. Mangano et al.   CLINICAL MICROBIOLOGY AND INFECTION

Gut microbes of mammalian herbivores facilitate intake of plant toxins

(2014) Kevin D. Kohl et al.   ECOLOGY LETTERS

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Members of the human gut microbiota involved in recovery from Vibrio cholerae infection

(2014) Ansel Hsiao et al.   NATURE

Role of the Lower and Upper Intestine in the Production and Absorption of Gut Microbiota-Derived PUFA Metabolites

(2014) Céline Druart et al.   PLoS One

Genome-Wide Analysis of Cold Adaptation in Indigenous Siberian Populations

(2014) Alexia Cardona et al.   PLoS One

Gut microbiome of the Hadza hunter-gatherers

(2014) Stephanie L. Schnorr et al.   Nature Communications

The Epidemiology and Evolution of Symbionts with Mixed-Mode Transmission

(2013) Dieter Ebert   Annual Review of Ecology Evolution and Systematics

Polyunsaturated fatty acid saturation by gut lactic acid bacteria affecting host lipid composition

(2013) S. Kishino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity

(2013) A. Everard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural Selection in a Bangladeshi Population from the Cholera-Endemic Ganges River Delta

(2013) E. K. Karlsson et al.   Science Translational Medicine

Limited Evidence for Classic Selective Sweeps in African Populations

(2012) J. M. Granka et al.   GENETICS

Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon

(2012) Xiaolei Ze et al.   ISME Journal

Symbiont-mediated insecticide resistance

(2012) Y. Kikuchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human pigmentation genes under environmental selection

(2012) Richard A Sturm et al.   GENOME BIOLOGY

Genome-Wide Association of BMI in African Americans

(2011) Maggie C.Y. Ng et al.   Obesity

Widespread Occurrence of Secondary Lipid Biosynthesis Potential in Microbial Lineages

(2011) Christine N. Shulse et al.   PLoS One

Adaptations to Climate-Mediated Selective Pressures in Humans

(2011) Angela M. Hancock et al.   PLoS Genetics

Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution

(2011) Matteo Fumagalli et al.   PLoS Genetics

A worldwide correlation of lactase persistence phenotype and genotypes

(2010) Yuval Itan et al.   BMC EVOLUTIONARY BIOLOGY

The ADH1B Arg47His polymorphism in East Asian populations and expansion of rice domestication in history

(2010) Yi Peng et al.   BMC EVOLUTIONARY BIOLOGY

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

(2010) Alan W Walker et al.   ISME Journal

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

(2010) Jan-Hendrik Hehemann et al.   NATURE

Human adaptations to diet, subsistence, and ecoregion are due to subtle shifts in allele frequency

(2010) A. M. Hancock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coadaptation of Helicobacter pylori and humans: ancient history, modern implications

(2009) John C. Atherton et al.   JOURNAL OF CLINICAL INVESTIGATION

Genomics and Evolution of Heritable Bacterial Symbionts

(2008) Nancy A. Moran et al.   Annual Review of Genetics

Heritability in the genomics era — concepts and misconceptions

(2008) Peter M. Visscher et al.   NATURE REVIEWS GENETICS

Adaptations to Climate in Candidate Genes for Common Metabolic Disorders

(2008) Angela M. Hancock et al.   PLoS Genetics