标题
Phylogenomic relationships and character evolution of the grape family (Vitaceae)
作者
关键词
Character evolution, Chloroplast genome, Grape family, Phylogenomics, Hyb-Seq, Vitaceae
出版物
MOLECULAR PHYLOGENETICS AND EVOLUTION
Volume 154, Issue -, Pages 106948
出版商
Elsevier BV
发表日期
2020-08-29
DOI
10.1016/j.ympev.2020.106948
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Testing morphological trait evolution and assessing species delimitations in the grape genus using a phylogenomic framework
- (2020) Zhi-Yao Ma et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
- (2019) Thomas L. P. Couvreur et al. Frontiers in Plant Science
- Nuclear and plastid DNA phylogeny of tribe Cardueae (Compositae) with Hyb-Seq data: A new subtribal classification and a temporal diversification framework
- (2019) Sonia Herrando-Moraira et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Diversification of Hawaiian Cyrtandra (Gesneriaceae) under the influence of incomplete lineage sorting and hybridization
- (2019) Joseph A. Kleinkopf et al. Journal of Systematics and Evolution
- Maple phylogeny and biogeography inferred from phylogenomic data
- (2019) Jianhua Li et al. Journal of Systematics and Evolution
- Hyb-Seq for Flowering Plant Systematics
- (2019) Steven Dodsworth et al. TRENDS IN PLANT SCIENCE
- Phylogenomics Yields New Insight Into Relationships Within Vernonieae (Asteraceae)
- (2019) Carolina M. Siniscalchi et al. Frontiers in Plant Science
- The Limits of Hyb-Seq for Herbarium Specimens: Impact of Preservation Techniques
- (2019) Laura L. Forrest et al. Frontiers in Ecology and Evolution
- High-throughput sequencing data clarify evolutionary relationships among North American Vitis species and improve identification in USDA Vitis germplasm collections
- (2018) Laura L. Klein et al. AMERICAN JOURNAL OF BOTANY
- Multi-locus phylogenetics, lineage sorting, and reticulation in Pinus subsection Australes
- (2018) David S. Gernandt et al. AMERICAN JOURNAL OF BOTANY
- Bridging the micro- and macroevolutionary levels in phylogenomics: Hyb-Seq solves relationships from populations to species and above
- (2018) Tamara Villaverde et al. NEW PHYTOLOGIST
- A detailed study of leaf micromorphology and anatomy of New World Vitis L. subgenus Vitis within a phylogenetic and ecological framework reveals evolutionary convergence
- (2018) Stefanie M. Ickert-Bond et al. Journal of Systematics and Evolution
- Structure and ontogeny of successive cambia in Tetrastigma (Vitaceae), the host plants of Rafflesiaceae
- (2018) Marcelo R. Pace et al. Journal of Systematics and Evolution
- The first record of fossil Vitaceae wood from the Southern Hemisphere, a new combination for Vitaceoxylon ramunculiformis , and reappraisal of the fossil record of the grape family (Vitaceae) from the Cenozoic of Australia
- (2018) Andrew C. Rozefelds et al. Journal of Systematics and Evolution
- Genome size variation and evolution in the grape family Vitaceae
- (2018) Zhao-Fu Chu et al. Journal of Systematics and Evolution
- Pseudocayratia , a new genus of Vitaceae from China and Japan with two new species and three new combinations
- (2018) Jun Wen et al. Journal of Systematics and Evolution
- Testing reticulate evolution of four Vitis species from East Asia using restriction-site associated DNA sequencing
- (2018) Zhi-Yao Ma et al. Journal of Systematics and Evolution
- A new phylogenetic tribal classification of the grape family (Vitaceae)
- (2018) Jun Wen et al. Journal of Systematics and Evolution
- Dispersal is associated with morphological innovation, but not increased diversification, in Cyphostemma (Vitaceae)
- (2018) David J. Hearn et al. Journal of Systematics and Evolution
- Chloroplast phylogenomics of the New World grape species (Vitis , Vitaceae)
- (2018) Jun Wen et al. Journal of Systematics and Evolution
- Evolutionary trends in Tetrastigma (Vitaceae): Morphological diversity and taxonomic implications
- (2018) Sadaf Habib et al. Journal of Systematics and Evolution
- Target sequence capture of nuclear-encoded genes for phylogenetic analysis in ferns
- (2018) Paul G. Wolf et al. Applications in Plant Sciences
- Targeting legume loci: A comparison of three methods for target enrichment bait design in Leguminosae phylogenomics
- (2018) Mohammad Vatanparast et al. Applications in Plant Sciences
- A dedicated target capture approach reveals variable genetic markers across micro- and macro-evolutionary time scales in palms
- (2018) Marylaure de La Harpe et al. Molecular Ecology Resources
- Resolving the rapid plant radiation of early diverging lineages in the tropical Zingiberales: Pushing the limits of genomic data
- (2018) Mónica M. Carlsen et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phylogenomics, biogeography, and adaptive radiation of grapes
- (2018) Zhi-Yao Ma et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering
- (2018) Matthew G Johnson et al. SYSTEMATIC BIOLOGY
- Recalcitrant deep and shallow nodes in Aristolochia (Aristolochiaceae) illuminated using anchored hybrid enrichment
- (2017) Stefan Wanke et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets
- (2017) Liping Zeng et al. NEW PHYTOLOGIST
- The Compositae Tree of Life in the age of phylogenomics
- (2017) Jennifer R. Mandel et al. Journal of Systematics and Evolution
- Inflorescence morphology and development in the basal rosid lineage Vitales
- (2017) Jean M. Gerrath et al. Journal of Systematics and Evolution
- Robust Phylogeny of Tetrastigma (Vitaceae) Based on Ten Plastid DNA Regions: Implications for Infrageneric Classification and Seed Character Evolution
- (2017) Sadaf Habib et al. Frontiers in Plant Science
- An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
- (2016) BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- Evolutionary history of chloridoid grasses estimated from 122 nuclear loci
- (2016) Amanda E. Fisher et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Another look at the phylogenetic position of the grape order Vitales: Chloroplast phylogenomics with an expanded sampling of key lineages
- (2016) Ning Zhang et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phylogeny of the Ampelocissus–Vitis clade in Vitaceae supports the New World origin of the grape genus
- (2016) Xiu-Qun Liu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Morphology, Structure, and Ontogeny of Trichomes of the Grape Genus (Vitis, Vitaceae)
- (2016) Zhi-Yao Ma et al. Frontiers in Plant Science
- HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment
- (2016) Matthew G. Johnson et al. Applications in Plant Sciences
- AMAS: a fast tool for alignment manipulation and computing of summary statistics
- (2016) Marek L. Borowiec PeerJ
- Inflorescence development in theVitis-Ampelocissusclade of Vitaceae: the unusual lamellate inflorescence ofPterisanthes
- (2015) Stefanie M. Ickert-Bond et al. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern AfricanOxalis(Oxalidaceae)
- (2015) Roswitha Schmickl et al. Molecular Ecology Resources
- Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment
- (2015) Jessica D. Stephens et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next-gen approaches
- (2015) Elizabeth A. Zimmer et al. Journal of Systematics and Evolution
- New combinations for the South American Cissus striata clade (Vitaceae)
- (2015) Julio Lombardi Phytotaxa
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Phylogeny of Cissus (Vitaceae) focusing on South American species
- (2014) Jacqueline Gomes Rodrigues et al. TAXON
- Hyb-Seq: Combining Target Enrichment and Genome Skimming for Plant Phylogenomics
- (2014) Kevin Weitemier et al. Applications in Plant Sciences
- Synopsis of Nekemias Raf., a segregate genus from Ampelopsis Michx. (Vitaceae) disjunct between eastern/southeastern Asia and eastern North America, with ten new combinations
- (2014) Jun Wen et al. PhytoKeys
- Oldest fruits of the grape family (Vitaceae) from the Late Cretaceous Deccan Cherts of India
- (2013) Steven R. Manchester et al. AMERICAN JOURNAL OF BOTANY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogeny of the non-monophyletic Cayratia Juss. (Vitaceae) and implications for character evolution and biogeography
- (2013) Limin Lu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Transcriptome Sequences Resolve Deep Relationships of the Grape Family
- (2013) Jun Wen et al. PLoS One
- Vitis Phylogenomics: Hybridization Intensities from a SNP Array Outperform Genotype Calls
- (2013) Allison J. Miller et al. PLoS One
- Evolution of the intercontinental disjunctions in six continents in the Ampelopsis clade of the grape family (Vitaceae)
- (2012) Ze-Long Nie et al. BMC EVOLUTIONARY BIOLOGY
- Seeds of Ampelocissus, Cissus, and Leea (Vitales) from the Paleogene of Western Peru and Their Biogeographic Significance
- (2012) Steven R. Manchester et al. INTERNATIONAL JOURNAL OF PLANT SCIENCES
- Molecular phylogeny of Cissus L. of Vitaceae (the grape family) and evolution of its pantropical intercontinental disjunctions
- (2012) Xiu-Qun Liu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Multi-gene Region Phylogenetic Analysis of the Grape Family (Vitaceae)
- (2012) Anna Trias-Blasi et al. SYSTEMATIC BOTANY
- Angiosperm phylogeny: 17 genes, 640 taxa
- (2011) Douglas E. Soltis et al. AMERICAN JOURNAL OF BOTANY
- Seed Morphology of Vitaceae
- (2011) Iju Chen et al. INTERNATIONAL JOURNAL OF PLANT SCIENCES
- Molecular phylogeny and biogeographic diversification of Parthenocissus (Vitaceae) disjunct between Asia and North America
- (2010) Ze-Long Nie et al. AMERICAN JOURNAL OF BOTANY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
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