标题
Transcriptome Sequences Resolve Deep Relationships of the Grape Family
作者
关键词
Phylogenetic analysis, Transcriptome analysis, Grapes, Phylogenetics, DNA sequence analysis, Plant phylogenetics, Animal phylogenetics, Paleogenetics
出版物
PLoS One
Volume 8, Issue 9, Pages e74394
出版商
Public Library of Science (PLoS)
发表日期
2013-09-18
DOI
10.1371/journal.pone.0074394
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Phylogeny of the non-monophyletic Cayratia Juss. (Vitaceae) and implications for character evolution and biogeography
- (2013) Limin Lu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Inferring ancient divergences requires genes with strong phylogenetic signals
- (2013) Leonidas Salichos et al. NATURE
- Targeted enrichment strategies for next-generation plant biology
- (2012) Richard Cronn et al. AMERICAN JOURNAL OF BOTANY
- Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae)
- (2012) Michael R. McKain et al. AMERICAN JOURNAL OF BOTANY
- Targeted sequence capture as a powerful tool for evolutionary analysis1
- (2012) Corrinne E. Grover et al. AMERICAN JOURNAL OF BOTANY
- Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
- (2012) Marcel H. Schulz et al. BIOINFORMATICS
- Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)
- (2012) Ylenia Chiari et al. BMC BIOLOGY
- Evolution of the intercontinental disjunctions in six continents in the Ampelopsis clade of the grape family (Vitaceae)
- (2012) Ze-Long Nie et al. BMC EVOLUTIONARY BIOLOGY
- Phylogeny and diversification of Valerianaceae (Dipsacales) in the southern Andes
- (2012) Charles D. Bell et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Using nuclear gene data for plant phylogenetics: Progress and prospects
- (2012) Elizabeth A. Zimmer et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Molecular phylogeny of Cissus L. of Vitaceae (the grape family) and evolution of its pantropical intercontinental disjunctions
- (2012) Xiu-Qun Liu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome
- (2012) Zhiyu Peng et al. NATURE BIOTECHNOLOGY
- Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
- (2012) Brant C. Faircloth et al. SYSTEMATIC BIOLOGY
- Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing
- (2011) Susanne U Franssen et al. BMC GENOMICS
- A combined morphological and molecular phylogenetic analysis of Parthenocissus (Vitaceae) and taxonomic implications
- (2011) LIMIN LU et al. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- Seed Morphology of Vitaceae
- (2011) Iju Chen et al. INTERNATIONAL JOURNAL OF PLANT SCIENCES
- The timing and the mode of evolution of wild grapes (Vitis)
- (2011) Giovanni Zecca et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Resolving the evolutionary relationships of molluscs with phylogenomic tools
- (2011) Stephen A. Smith et al. NATURE
- Phylogenomics reveals deep molluscan relationships
- (2011) Kevin M. Kocot et al. NATURE
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Molecular phylogeny and biogeographic diversification of Parthenocissus (Vitaceae) disjunct between Asia and North America
- (2010) Ze-Long Nie et al. AMERICAN JOURNAL OF BOTANY
- A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
- (2010) Liang Liu et al. BMC EVOLUTIONARY BIOLOGY
- S-DIVA (Statistical Dispersal-Vicariance Analysis): A tool for inferring biogeographic histories
- (2010) Yan Yu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life
- (2010) C. T. Hittinger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- A molecular phylogeny and classification of Bignoniaceae
- (2009) Richard G. Olmstead et al. AMERICAN JOURNAL OF BOTANY
- Polyploidy and angiosperm diversification
- (2009) Douglas E. Soltis et al. AMERICAN JOURNAL OF BOTANY
- Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales
- (2009) Michael S. Barker et al. Genome Biology and Evolution
- Time Tree of Rubiaceae: Phylogeny and Dating the Family, Subfamilies, and Tribes
- (2009) Birgitta Bremer et al. INTERNATIONAL JOURNAL OF PLANT SCIENCES
- Angiosperm diversification through time
- (2008) Susana Magallón et al. AMERICAN JOURNAL OF BOTANY
- Use of Simultaneous Analyses to Guide Fossil‐Based Calibrations of Pinaceae Phylogeny
- (2008) David S. Gernandt et al. INTERNATIONAL JOURNAL OF PLANT SCIENCES
- Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
- (2008) M. S. Barker et al. MOLECULAR BIOLOGY AND EVOLUTION
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- Accounting for Phylogenetic Uncertainty in Biogeography: A Bayesian Approach to Dispersal-Vicariance Analysis of the Thrushes (Aves: Turdus)
- (2008) Johan A. A. Nylander et al. SYSTEMATIC BIOLOGY
- Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis
- (2008) Richard H. Ree et al. SYSTEMATIC BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started