Chloroplast phylogenomics of the New World grape species (Vitis , Vitaceae)

A molecular phylogeny of Staphyleaceae: Implications for generic delimitation and classical biogeographic disjunctions in the family

(2017) AJ Harris et al.   Journal of Systematics and Evolution

The Shenzhen Declaration on Plant Sciences-Uniting plant sciences and society to build a green, sustainable Earth

(2017) Peter R. Crane et al.   Journal of Systematics and Evolution

Inflorescence morphology and development in the basal rosid lineage Vitales

(2017) Jean M. Gerrath et al.   Journal of Systematics and Evolution

Developing integrative systematics in the informatics and genomic era, and calling for a global Biodiversity Cyberbank

(2017) Jun Wen et al.   Journal of Systematics and Evolution

Plant speciation across environmental gradients and the occurrence and nature of hybrid zones

(2017) Richard J. Abbott   Journal of Systematics and Evolution

Climatic Niche Characterization of 13 North American Vitis Species

(2016) S. T. Callen et al.   AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE

Testing the monophyly of Aesculus L. and Billia Peyr., woody genera of tribe Hippocastaneae of the Sapindaceae

(2016) AJ Harris et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny of the Ampelocissus–Vitis clade in Vitaceae supports the New World origin of the grape genus

(2016) Xiu-Qun Liu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Species delimitations in plants: lessons learned from potato taxonomy by a practicing taxonomist

(2016) David M. Spooner   Journal of Systematics and Evolution

Intercontinental disjunctions between eastern Asia and western North America in vascular plants highlight the biogeographic importance of the Bering land bridge from late Cretaceous to Neogene

(2016) Jun Wen et al.   Journal of Systematics and Evolution

Expression patterns ofAP1,FUL,FTandLEAFYorthologs in Vitaceae support the homology of tendrils and inflorescences throughout the grape family

(2015) Ning Zhang et al.   Journal of Systematics and Evolution

Evolution of the eastern Asian-North American biogeographic disjunctions in ferns and lycophytes

(2015) Jian-Ying XIANG et al.   Journal of Systematics and Evolution

Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next-gen approaches

(2015) Elizabeth A. Zimmer et al.   Journal of Systematics and Evolution

Collections-based systematics: Opportunities and outlook for 2050

(2015) Jun Wen et al.   Journal of Systematics and Evolution

Congruent Deep Relationships in the Grape Family (Vitaceae) Based on Sequences of Chloroplast Genomes and Mitochondrial Genes via Genome Skimming

(2015) Ning Zhang et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Analysis and Visualization of Complex Macroevolutionary Dynamics: An Example from Australian Scincid Lizards

(2014) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

BAMMtools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

(2014) Daniel L. Rabosky et al.   Methods in Ecology and Evolution

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

A phylogenetic analysis of the grape genus (Vitis L.) reveals broad reticulation and concurrent diversification during neogene and quaternary climate change

(2013) Yizhen Wan et al.   BMC EVOLUTIONARY BIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptome Sequences Resolve Deep Relationships of the Grape Family

(2013) Jun Wen et al.   PLoS One

Integrated Fossil and Molecular Data Reveal the Biogeographic Diversification of the Eastern Asian-Eastern North American Disjunct Hickory Genus (Carya Nutt.)

(2013) Jing-Bo Zhang et al.   PLoS One

Vitis Phylogenomics: Hybridization Intensities from a SNP Array Outperform Genotype Calls

(2013) Allison J. Miller et al.   PLoS One

Biogeography: Where do we go from here?

(2013) Jun Wen et al.   TAXON

Inferring the biogeographic origins of inter-continental disjunct endemics using a Bayes-DIVA approach

(2013) AJ HARRIS et al.   Journal of Systematics and Evolution

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Evolution of the intercontinental disjunctions in six continents in the Ampelopsis clade of the grape family (Vitaceae)

(2012) Ze-Long Nie et al.   BMC EVOLUTIONARY BIOLOGY

Using nuclear gene data for plant phylogenetics: Progress and prospects

(2012) Elizabeth A. Zimmer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Diversification in North American arid lands: Niche conservatism, divergence and expansion of habitat explain speciation in the genus Ephedra

(2012) Israel Loera et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic diversity, structure, and patterns of differentiation in the genus Vitis

(2012) M. Aradhya et al.   PLANT SYSTEMATICS AND EVOLUTION

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Seed Morphology of Vitaceae

(2011) Iju Chen et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

The timing and the mode of evolution of wild grapes (Vitis)

(2011) Giovanni Zecca et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic structure and domestication history of the grape

(2011) Sean Myles et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Calibrated Tree Priors for Relaxed Phylogenetics and Divergence Time Estimation

(2011) Joseph Heled et al.   SYSTEMATIC BIOLOGY

Molecular phylogeny and biogeographic diversification of Parthenocissus (Vitaceae) disjunct between Asia and North America

(2010) Ze-Long Nie et al.   AMERICAN JOURNAL OF BOTANY

Molecular phylogeny of the genus Vitis (Vitaceae) based on plastid markers

(2010) Dorothee Tröndle et al.   AMERICAN JOURNAL OF BOTANY

Genetic variation and biogeography of the disjunct Vitis subg. Vitis (Vitaceae)

(2010) Jean-Pierre Péros et al.   JOURNAL OF BIOGEOGRAPHY

Rapid Genomic Characterization of the Genus Vitis

(2010) Sean Myles et al.   PLoS One

New Heuristic Methods for Joint Species Delimitation and Species Tree Inference

(2009) Brian C. O'Meara   SYSTEMATIC BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Rooting and Dating Maples (Acer) with an Uncorrelated-Rates Molecular Clock: Implications for North American/Asian Disjunctions

(2008) Susanne S. Renner et al.   SYSTEMATIC BIOLOGY

Phylogeny and Biogeography of Tsuga (Pinaceae) Inferred from Nuclear Ribosomal ITS and Chloroplast DNA Sequence Data

(2008) Nathan P. Havill et al.   SYSTEMATIC BOTANY