High-throughput sequencing data clarify evolutionary relationships among North American Vitis species and improve identification in USDA Vitis germplasm collections
出版年份 2018 全文链接
标题
High-throughput sequencing data clarify evolutionary relationships among North American Vitis
species and improve identification in USDA Vitis
germplasm collections
作者
关键词
-
出版物
AMERICAN JOURNAL OF BOTANY
Volume 105, Issue 2, Pages 215-226
出版商
Wiley
发表日期
2018-03-12
DOI
10.1002/ajb2.1033
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Exploiting Wild Relatives for Genomics-assisted Breeding of Perennial Crops
- (2017) Zoë Migicovsky et al. Frontiers in Plant Science
- Patterns of genomic and phenomic diversity in wine and table grapes
- (2017) Zoë Migicovsky et al. Horticulture Research
- Single nucleotide polymorphism discovery via genotyping by sequencing to assess population genetic structure and recurrent polyploidization in Andropogon gerardii
- (2016) Christine A. McAllister et al. AMERICAN JOURNAL OF BOTANY
- Climatic Niche Characterization of 13 North American Vitis Species
- (2016) S. T. Callen et al. AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE
- Genomic ancestry estimation quantifies use of wild species in grape breeding
- (2016) Zoë Migicovsky et al. BMC GENOMICS
- Phylogeny of the Ampelocissus–Vitis clade in Vitaceae supports the New World origin of the grape genus
- (2016) Xiu-Qun Liu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Rootstocks: Diversity, Domestication, and Impacts on Shoot Phenotypes
- (2016) Emily J. Warschefsky et al. TRENDS IN PLANT SCIENCE
- Climate change decouples drought from early wine grape harvests in France
- (2016) Benjamin I. Cook et al. Nature Climate Change
- A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae)
- (2016) Simon Uribe-Convers et al. PLoS One
- Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites
- (2015) Julia Chifman et al. JOURNAL OF THEORETICAL BIOLOGY
- Phylogeny and biogeography of the American live oaks (QuercussubsectionVirentes): a genomic and population genetics approach
- (2015) Jeannine Cavender-Bares et al. MOLECULAR ECOLOGY
- Latent developmental and evolutionary shapes embedded within the grapevine leaf
- (2015) Daniel H. Chitwood et al. NEW PHYTOLOGIST
- Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies
- (2015) Adam D. Leaché et al. SYSTEMATIC BIOLOGY
- Expression patterns ofAP1,FUL,FTandLEAFYorthologs in Vitaceae support the homology of tendrils and inflorescences throughout the grape family
- (2015) Ning Zhang et al. Journal of Systematics and Evolution
- Enhancing the Conservation of Crop Wild Relatives in England
- (2015) Hannah Fielder et al. PLoS One
- Heterozygous Mapping Strategy (HetMappS) for High Resolution Genotyping-By-Sequencing Markers: A Case Study in Grapevine
- (2015) Katie E. Hyma et al. PLoS One
- The Genetic Structure of Marijuana and Hemp
- (2015) Jason Sawler et al. PLoS One
- Genotyping by Sequencing for SNP-Based Linkage Map Construction and QTL Analysis of Chilling Requirement and Bloom Date in Peach [Prunus persica (L.) Batsch]
- (2015) Douglas Gary Bielenberg et al. PLoS One
- Quartet Inference from SNP Data Under the Coalescent Model
- (2014) Julia Chifman et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline
- (2014) Jeffrey C. Glaubitz et al. PLoS One
- A Framework Phylogeny of the American Oak Clade Based on Sequenced RAD Data
- (2014) Andrew L. Hipp et al. PLoS One
- Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding
- (2014) Jiangfeng He et al. Frontiers in Plant Science
- A phylogenetic analysis of the grape genus (Vitis L.) reveals broad reticulation and concurrent diversification during neogene and quaternary climate change
- (2013) Yizhen Wan et al. BMC EVOLUTIONARY BIOLOGY
- A Modern Ampelography: A Genetic Basis for Leaf Shape and Venation Patterning in Grape
- (2013) D. H. Chitwood et al. PLANT PHYSIOLOGY
- Vitis Phylogenomics: Hybridization Intensities from a SNP Array Outperform Genotype Calls
- (2013) Allison J. Miller et al. PLoS One
- Climate change, wine, and conservation
- (2013) L. Hannah et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Chestnut resistance to the blight disease: insights from transcriptome analysis
- (2012) Abdelali Barakat et al. BMC PLANT BIOLOGY
- Bayesian Phylogenetics with BEAUti and the BEAST 1.7
- (2012) Alexei J. Drummond et al. MOLECULAR BIOLOGY AND EVOLUTION
- Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis
- (2012) David Bryant et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genotyping-by-Sequencing for Plant Breeding and Genetics
- (2012) Jesse A. Poland et al. Plant Genome
- From forest to field: Perennial fruit crop domestication
- (2011) Allison J. Miller et al. AMERICAN JOURNAL OF BOTANY
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- The timing and the mode of evolution of wild grapes (Vitis)
- (2011) Giovanni Zecca et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Genome-wide genetic marker discovery and genotyping using next-generation sequencing
- (2011) John W. Davey et al. NATURE REVIEWS GENETICS
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Genetic structure and domestication history of the grape
- (2011) Sean Myles et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular phylogeny of the genus Vitis (Vitaceae) based on plastid markers
- (2010) Dorothee Tröndle et al. AMERICAN JOURNAL OF BOTANY
- Genetic variation and biogeography of the disjunct Vitis subg. Vitis (Vitaceae)
- (2010) Jean-Pierre Péros et al. JOURNAL OF BIOGEOGRAPHY
- The evolutionary ecology of clonally propagated domesticated plants
- (2010) Doyle McKey et al. NEW PHYTOLOGIST
- Variation Within and Among Vitis spp. for Foliar Resistance to the Powdery Mildew Pathogen Erysiphe necator
- (2010) Lance Cadle-Davidson et al. PLANT DISEASE
- Evolution and history of grapevine (Vitis vinifera) under domestication: new morphometric perspectives to understand seed domestication syndrome and reveal origins of ancient European cultivars
- (2009) Jean-Frédéric Terral et al. ANNALS OF BOTANY
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Phyutility: a phyloinformatics tool for trees, alignments and molecular data
- (2008) S. A. Smith et al. BIOINFORMATICS
- Variation Within and Between Vitis spp. for Foliar Resistance to the Downy Mildew Pathogen Plasmopara viticola
- (2008) Lance Cadle-Davidson PLANT DISEASE
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