Rhizosphere fungi actively assimilating plant-derived carbon in a grassland soil

Root Exudation of Primary Metabolites: Mechanisms and Their Roles in Plant Responses to Environmental Stimuli

(2019) Alberto Canarini et al.   Frontiers in Plant Science

Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

(2017) S Emilia Hannula et al.   ISME Journal

Fungal Decision to Exploit or Explore Depends on Growth Rate

(2017) Stavros D. Veresoglou et al.   MICROBIAL ECOLOGY

Soil networks become more connected and take up more carbon as nature restoration progresses

(2017) Elly Morriën et al.   Nature Communications

Schrödinger’s microbes: Tools for distinguishing the living from the dead in microbial ecosystems

(2017) Joanne B. Emerson et al.   Microbiome

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

(2017) Frédéric Mahé et al.   Nature Ecology & Evolution

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Dimensions of biodiversity in the Earth mycobiome

(2016) Kabir G. Peay et al.   NATURE REVIEWS MICROBIOLOGY

Effects of root decomposition on plant-soil feedback of early- and mid-successional plant species

(2016) Naili Zhang et al.   NEW PHYTOLOGIST

Sebacinales - one thousand and one interactions with land plants

(2016) Michael Weiß et al.   NEW PHYTOLOGIST

Understanding soil food web dynamics, how close do we get?

(2016) E. Morriën   SOIL BIOLOGY & BIOCHEMISTRY

Soil Fungal:Bacterial Ratios Are Linked to Altered Carbon Cycling

(2016) Ashish A. Malik et al.   Frontiers in Microbiology

Resource Partitioning between Bacteria, Fungi, and Protists in the Detritusphere of an Agricultural Soil

(2016) Susanne Kramer et al.   Frontiers in Microbiology

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

(2016) Paul Carini et al.   Nature Microbiology

Quantitative Microbial Ecology through Stable Isotope Probing

(2015) Bruce A. Hungate et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal Traits That Drive Ecosystem Dynamics on Land

(2015) Kathleen K. Treseder et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites

(2015) Bruce C. Thomson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Branching out: Towards a trait-based understanding of fungal ecology

(2015) Carlos A. Aguilar-Trigueros et al.   Fungal Biology Reviews

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Soil biodiversity and soil community composition determine ecosystem multifunctionality

(2014) C. Wagg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Root exudates mediated interactions belowground

(2014) Feth el Zahar Haichar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses

(2013) Steven J Blazewicz et al.   ISME Journal

Strong coupling of plant and fungal community structure across western Amazonian rainforests

(2013) Kabir G Peay et al.   ISME Journal

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

Snakemake--a scalable bioinformatics workflow engine

(2012) J. Koster et al.   BIOINFORMATICS

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

13C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato (Solanum tuberosum) cultivar and its parental isoline

(2012) S. E. Hannula et al.   NEW PHYTOLOGIST

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

(2012) Daniel McDonald et al.   GigaScience

The functional role of producer diversity in ecosystems

(2011) Bradley J. Cardinale et al.   AMERICAN JOURNAL OF BOTANY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Yeast communities associated with the bulk-soil, rhizosphere and ectomycorrhizosphere of a Nothofagus pumilio forest in northwestern Patagonia, Argentina

(2011) M. Cecilia Mestre et al.   FEMS MICROBIOLOGY ECOLOGY

ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time

(2011) Yunpeng Cai et al.   NUCLEIC ACIDS RESEARCH

Bottom-up effects of plant diversity on multitrophic interactions in a biodiversity experiment

(2010) Christoph Scherber et al.   NATURE

Labile soil carbon inputs mediate the soil microbial community composition and plant residue decomposition rates

(2010) Marie-Anne de Graaff et al.   NEW PHYTOLOGIST

Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2

(2010) B. Drigo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The importance and ecology of yeasts in soil

(2010) Alfred Botha   SOIL BIOLOGY & BIOCHEMISTRY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors

(2009) M. Buée et al.   PLANT AND SOIL

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL

Plant-driven selection of microbes

(2008) Anton Hartmann et al.   PLANT AND SOIL

Real-time PCR and microscopy: Are the two methods measuring the same unit of arbuscular mycorrhizal fungal abundance?

(2007) Hannes A. Gamper et al.   FUNGAL GENETICS AND BIOLOGY