Long non-coding RNAs in plants: emerging modulators of gene activity in development and stress responses
出版年份 2020 全文链接
标题
Long non-coding RNAs in plants: emerging modulators of gene activity in development and stress responses
作者
关键词
-
出版物
PLANTA
Volume 252, Issue 5, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2020-10-25
DOI
10.1007/s00425-020-03480-5
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- R-Loop Mediated trans Action of the APOLO Long Noncoding RNA
- (2020) Federico Ariel et al. MOLECULAR CELL
- Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery
- (2020) Lekha Nair et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Metabolic Labeling of RNAs Uncovers Hidden Features and Dynamics of the Arabidopsis Transcriptome
- (2020) Emese X. Szabo et al. PLANT CELL
- High-Throughput CRISPR/Cas9 Mutagenesis Streamlines Trait Gene Identification in Maize
- (2020) Haijun Liu et al. PLANT CELL
- Pervasive functional translation of noncanonical human open reading frames
- (2020) Jin Chen et al. SCIENCE
- U1 snRNP regulates chromatin retention of noncoding RNAs
- (2020) Yafei Yin et al. NATURE
- Characterization of Arabidopsis thaliana promoter Bidirectionality and Antisense RNAs by Depletion of Nuclear RNA Decay Pathways
- (2020) Axel Thieffry et al. PLANT CELL
- Long Non-coding RNA in Plants in the Era of Reference Sequences
- (2020) Hikmet Budak et al. Frontiers in Plant Science
- DNA Processing in the Context of Noncoding Transcription
- (2020) Uthra Gowthaman et al. TRENDS IN BIOCHEMICAL SCIENCES
- A cis‐acting bidirectional transcription switch controls sexual dimorphism in the liverwort
- (2019) Tetsuya Hisanaga et al. EMBO JOURNAL
- Control of cognate sense mRNA translation by cis-natural antisense RNAs
- (2019) Jules Deforges et al. PLANT PHYSIOLOGY
- Global Positioning System: Understanding Long Noncoding RNAs through Subcellular Localization
- (2019) Joana Carlevaro-Fita et al. MOLECULAR CELL
- Delivery of BACE1 siRNA mediated by TARBP-BTP fusion protein reduces β-amyloid deposits in a transgenic mouse model of Alzheimer’s disease
- (2019) Mohamed Mohamed Haroon et al. JOURNAL OF BIOSCIENCES
- Decrypting noncoding RNA interactions, structures, and functional networks
- (2019) Muller Fabbri et al. GENOME RESEARCH
- Telomerase RNAs in land plants
- (2019) Petr Fajkus et al. NUCLEIC ACIDS RESEARCH
- Generation of a multiplex mutagenesis population via pooled CRISPR ‐Cas9 in soya bean
- (2019) Mengyan Bai et al. PLANT BIOTECHNOLOGY JOURNAL
- Ef-cd locus shortens rice maturity duration without yield penalty
- (2019) Jun Fang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dynamic regulation of chromatin topology and transcription by inverted repeat-derived small RNAs in sunflower
- (2019) Delfina Gagliardi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Plant Noncoding RNAs: Hidden Players in Development and Stress Responses
- (2019) Yu Yu et al. Annual Review of Cell and Developmental Biology
- Autonomous pathway: FLOWERING LOCUS C repression through an antisense-mediated chromatin silencing mechanism
- (2019) Zhe Wu et al. PLANT PHYSIOLOGY
- The conserved structure of plant telomerase RNA provides the missing link for an evolutionary pathway from ciliates to humans
- (2019) Jiarui Song et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multiplex CRISPR/Cas9‐mediated metabolic engineering increases soya bean isoflavone content and resistance to soya bean mosaic virus
- (2019) Peipei Zhang et al. PLANT BIOTECHNOLOGY JOURNAL
- Analysis of Soybean Long Non-Coding RNAs Reveals a Subset of Small Peptide-Coding Transcripts
- (2019) Xiao Lin et al. PLANT PHYSIOLOGY
- Arabidopsis thaliana ambient temperature responsive lncRNAs
- (2018) Edouard Severing et al. BMC PLANT BIOLOGY
- A novel antisense long noncoding RNA,TWISTED LEAF , maintains leaf blade flattening by regulating its associated sense R2R3-MYB gene in rice
- (2018) Xue Liu et al. NEW PHYTOLOGIST
- A noncoding RNA transcribed from the AGAMOUS (AG ) second intron binds to CURLY LEAF and represses AG expression in leaves
- (2018) Hui-Wen Wu et al. NEW PHYTOLOGIST
- Stress-responsive regulation of long non-coding RNA polyadenylation in Oryza sativa
- (2018) Jiapei Yuan et al. PLANT JOURNAL
- CRISPR/Cas9-mediated mutagenesis of lncRNA1459 alters tomato fruit ripening
- (2018) Ran Li et al. PLANT JOURNAL
- Systematic identification of long non-coding RNAs during pollen development and fertilization in Brassica rapa
- (2018) Li Huang et al. PLANT JOURNAL
- Sequences enriched in Alu repeats drive nuclear localization of long RNAs in human cells
- (2018) Yoav Lubelsky et al. NATURE
- Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice
- (2018) Ying Wang et al. Nature Communications
- Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation
- (2018) Peter Kindgren et al. Nature Communications
- Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA
- (2018) Xinyue Zhao et al. Nature Communications
- Genome-wide methods for investigating long noncoding RNAs
- (2018) Mei Cao et al. BIOMEDICINE & PHARMACOTHERAPY
- Genome-wide Targeted Mutagenesis in Rice Using the CRISPR/Cas9 System
- (2017) Yuming Lu et al. Molecular Plant
- Construction of a Genome-Wide Mutant Library in Rice Using CRISPR/Cas9
- (2017) Xiangbing Meng et al. Molecular Plant
- The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering
- (2017) Rossana Henriques et al. NEW PHYTOLOGIST
- EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments
- (2017) Bailing Zhou et al. NUCLEIC ACIDS RESEARCH
- CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features
- (2017) Yu-Jian Kang et al. NUCLEIC ACIDS RESEARCH
- ELF18-INDUCED LONG-NONCODING RNA Associates with Mediator to Enhance Expression of Innate Immune Response Genes in Arabidopsis
- (2017) Jun Sung Seo et al. PLANT CELL
- Generation of a Collection of Mutant Tomato Lines Using Pooled CRISPR Libraries
- (2017) Thomas B. Jacobs et al. PLANT PHYSIOLOGY
- A Nucleus-Localized Long Non-Coding RNA Enhances Drought and Salt Stress Tolerance
- (2017) Tao Qin et al. PLANT PHYSIOLOGY
- Long noncoding miRNA gene represses wheat β-diketone waxes
- (2017) Daiqing Huang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation
- (2017) Jérémie Bazin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Modular function of long noncoding RNA, COLDAIR, in the vernalization response
- (2017) Dong-Hwan Kim et al. PLoS Genetics
- Non-coding RNAs and Their Roles in Stress Response in Plants
- (2017) Jingjing Wang et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana
- (2016) Jiapei Yuan et al. BMC GENOMICS
- Chromatin environment, transcriptional regulation, and splicing distinguish lincRNAs and mRNAs
- (2016) Marta Melé et al. GENOME RESEARCH
- Unique features of long non-coding RNA biogenesis and function
- (2016) Jeffrey J. Quinn et al. NATURE REVIEWS GENETICS
- The biogenesis and emerging roles of circular RNAs
- (2016) Ling-Ling Chen NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Integrative classification of human coding and noncoding genes through RNA metabolism profiles
- (2016) Neelanjan Mukherjee et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- UniProt: the universal protein knowledgebase
- (2016) NUCLEIC ACIDS RESEARCH
- Upregulation of LINC-AP2 is negatively correlated with AP2 gene expression with Turnip crinkle virus infection in Arabidopsis thaliana
- (2016) Ruimin Gao et al. PLANT CELL REPORTS
- Nascent RNA sequencing reveals distinct features in plant transcription
- (2016) Jonathan Hetzel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Super-resolution ribosome profiling reveals unannotated translation events inArabidopsis
- (2016) Polly Yingshan Hsu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice
- (2016) Yourong Fan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells
- (2016) S. John Liu et al. SCIENCE
- Mutually exclusive sense–antisense transcription at FLC facilitates environmentally induced gene repression
- (2016) Stefanie Rosa et al. Nature Communications
- Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq)
- (2016) Julien Lagarde et al. Nature Communications
- Integrative classification of human coding and noncoding genes through RNA metabolism profiles
- (2016) Neelanjan Mukherjee et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- COOLAIR Antisense RNAs Form Evolutionarily Conserved Elaborate Secondary Structures
- (2016) Emily J. Hawkes et al. Cell Reports
- RNA Exosome-Regulated Long Non-Coding RNA Transcription Controls Super-Enhancer Activity
- (2015) Evangelos Pefanis et al. CELL
- Long non-coding RNAs and their functions in plants
- (2015) Julia A Chekanova CURRENT OPINION IN PLANT BIOLOGY
- RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening
- (2015) Benzhong Zhu et al. JOURNAL OF EXPERIMENTAL BOTANY
- Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypiumspp.)
- (2015) Maojun Wang et al. NEW PHYTOLOGIST
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Long noncoding RNA transcriptome of plants
- (2015) Jun Liu et al. PLANT BIOTECHNOLOGY JOURNAL
- Battles and hijacks: noncoding transcription in plants
- (2015) Federico Ariel et al. TRENDS IN PLANT SCIENCE
- RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites
- (2014) Jesse M. Engreitz et al. CELL
- Epigenetic regulation of theIgf2/H19gene cluster
- (2014) M. Nordin et al. CELL PROLIFERATION
- Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis
- (2014) Florian Bardou et al. DEVELOPMENTAL CELL
- Noncoding Transcription by Alternative RNA Polymerases Dynamically Regulates an Auxin-Driven Chromatin Loop
- (2014) Federico Ariel et al. MOLECULAR CELL
- Functional Consequences of Splicing of the Antisense Transcript COOLAIR on FLC Transcription
- (2014) Sebastian Marquardt et al. MOLECULAR CELL
- Transcriptional enhancers: from properties to genome-wide predictions
- (2014) Daria Shlyueva et al. NATURE REVIEWS GENETICS
- Characterization of stress-responsive lncRNAs inArabidopsis thalianaby integrating expression, epigenetic and structural features
- (2014) Chao Di et al. PLANT JOURNAL
- AntisenseCOOLAIRmediates the coordinated switching of chromatin states atFLCduring vernalization
- (2014) Tibor Csorba et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light
- (2014) Y. Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Long non-coding RNAs
- (2014) Xiaoxia Ma et al. RNA Biology
- Terminate and make a loop: regulation of transcriptional directionality
- (2014) Pawel Grzechnik et al. TRENDS IN BIOCHEMICAL SCIENCES
- Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications
- (2014) Aurélie Kapusta et al. TRENDS IN GENETICS
- Evolutionary conservation of cold-induced antisense RNAs of FLOWERING LOCUS C in Arabidopsis thaliana perennial relatives
- (2014) Loren Castaings et al. Nature Communications
- Arabidopsis RRP6L1 and RRP6L2 Function in FLOWERING LOCUS C Silencing via Regulation of Antisense RNA Synthesis
- (2014) Jun-Hye Shin et al. PLoS Genetics
- Genome-wide discovery and characterization of maize long non-coding RNAs
- (2014) Lin Li et al. GENOME BIOLOGY
- Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins
- (2013) Mitchell Guttman et al. CELL
- Long Noncoding RNAs: Past, Present, and Future
- (2013) J. T. Y. Kung et al. GENETICS
- Long non-coding RNAs: new players in cell differentiation and development
- (2013) Alessandro Fatica et al. NATURE REVIEWS GENETICS
- Long noncoding RNAs responsive toFusarium oxysporuminfection inArabidopsis thaliana
- (2013) Qian-Hao Zhu et al. NEW PHYTOLOGIST
- Nonsense-Mediated Decay of Alternative Precursor mRNA Splicing Variants Is a Major Determinant of the Arabidopsis Steady State Transcriptome
- (2013) G. Drechsel et al. PLANT CELL
- Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs
- (2013) Aurélie Kapusta et al. PLoS Genetics
- Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA
- (2012) Hai Zhou et al. CELL RESEARCH
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- (2012) T. Derrien et al. GENOME RESEARCH
- Long Noncoding RNAs with snoRNA Ends
- (2012) Qing-Fei Yin et al. MOLECULAR CELL
- A SWI/SNF Chromatin-Remodeling Complex Acts in Noncoding RNA-Mediated Transcriptional Silencing
- (2012) Yongyou Zhu et al. MOLECULAR CELL
- RNA-Directed DNA Methylation Is Involved in Regulating Photoperiod-Sensitive Male Sterility in Rice
- (2012) Jihua Ding et al. Molecular Plant
- The H19 lincRNA is a developmental reservoir of miR-675 that suppresses growth and Igf1r
- (2012) Andrew Keniry et al. NATURE CELL BIOLOGY
- Role of recently evolved miRNA regulation of sunflowerHaWRKY6in response to temperature damage
- (2012) Jorge I. Giacomelli et al. NEW PHYTOLOGIST
- Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis
- (2012) J. Liu et al. PLANT CELL
- BcMF11, a novel non-coding RNA gene from Brassica campestris, is required for pollen development and male fertility
- (2012) Jiang-Hua Song et al. PLANT CELL REPORTS
- A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice
- (2012) J. Ding et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A novel hypoxic stress-responsive long non-coding RNA transcribed by RNA polymerase III in Arabidopsis
- (2012) Juan Wu et al. RNA Biology
- Surveillance of 3′ Noncoding Transcripts Requires FIERY1 and XRN3 in Arabidopsis
- (2012) Yukio Kurihara et al. G3-Genes Genomes Genetics
- Chromatin Isolation by RNA Purification (ChIRP)
- (2012) Ci Chu et al. Jove-Journal of Visualized Experiments
- Molecular Mechanisms of Long Noncoding RNAs
- (2011) Kevin C. Wang et al. MOLECULAR CELL
- Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq
- (2011) P. J. Shepard et al. RNA
- Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA
- (2010) J. B. Heo et al. SCIENCE
- Nuclear Speckles
- (2010) D. L. Spector et al. Cold Spring Harbor Perspectives in Biology
- Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
- (2009) Szymon Swiezewski et al. NATURE
- Aberrant mRNA Transcripts and the Nonsense-Mediated Decay Proteins UPF2 and UPF3 Are Enriched in the Arabidopsis Nucleolus
- (2009) S. H. Kim et al. PLANT CELL
- Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis
- (2009) Y. Kurihara et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Targeted 3' Processing of Antisense Transcripts Triggers Arabidopsis FLC Chromatin Silencing
- (2009) F. Liu et al. SCIENCE
- 3′ End Processing of a Long Nuclear-Retained Noncoding RNA Yields a tRNA-like Cytoplasmic RNA
- (2008) Jeremy E. Wilusz et al. CELL
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started