The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering

Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis

(2017) Alba-Rocio Corrales et al.   PLANT CELL AND ENVIRONMENT

Functions of plants long non-coding RNAs

(2016) Sarfraz Shafiq et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Super-resolution ribosome profiling reveals unannotated translation events inArabidopsis

(2016) Polly Yingshan Hsu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutually exclusive sense–antisense transcription at FLC facilitates environmentally induced gene repression

(2016) Stefanie Rosa et al.   Nature Communications

Kernel Architecture of the Genetic Circuitry of the Arabidopsis Circadian System

(2016) Mathias Foo et al.   PLoS Computational Biology

Photoperiodic Flowering: Time Measurement Mechanisms in Leaves

(2015) Young Hun Song et al.   Annual Review of Plant Biology

The GI-CDF module of Arabidopsis affects freezing tolerance and growth as well as flowering

(2015) Fabio Fornara et al.   PLANT JOURNAL

The dynamics ofFLOWERING LOCUS Texpression encodes long-day information

(2015) Martín Krzymuski et al.   PLANT JOURNAL

An Evolutionarily Conserved DOF-CONSTANS Module Controls Plant Photoperiodic Signaling

(2015) Eva Lucas-Reina et al.   PLANT PHYSIOLOGY

Thefrequencynatural antisense transcript first promotes, then represses,frequencygene expression via facultative heterochromatin

(2015) Na Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Battles and hijacks: noncoding transcription in plants

(2015) Federico Ariel et al.   TRENDS IN PLANT SCIENCE

Emerging roles of long non-coding RNA in root developmental plasticity and regulation of phosphate homeostasis

(2015) Jeremie Bazin et al.   Frontiers in Plant Science

Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis

(2014) Florian Bardou et al.   DEVELOPMENTAL CELL

Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis

(2014) H. Wang et al.   GENOME RESEARCH

Mechanisms Underlying Epigenetic Regulation in Arabidopsis thaliana

(2014) A. L. Jones et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Characterization of tomato Cycling Dof Factors reveals conserved and new functions in the control of flowering time and abiotic stress responses

(2014) Alba-Rocío Corrales et al.   JOURNAL OF EXPERIMENTAL BOTANY

Noncoding Transcription by Alternative RNA Polymerases Dynamically Regulates an Auxin-Driven Chromatin Loop

(2014) Federico Ariel et al.   MOLECULAR CELL

Transcriptional interference by antisense RNA is required for circadian clock function

(2014) Zhihong Xue et al.   NATURE

Regulation of microRNA biogenesis

(2014) Minju Ha et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

AntisenseCOOLAIRmediates the coordinated switching of chromatin states atFLCduring vernalization

(2014) Tibor Csorba et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light

(2014) Y. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long non-coding RNAs

(2014) Xiaoxia Ma et al.   RNA Biology

RNA and dynamic nuclear organization

(2014) J. Rinn et al.   SCIENCE

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

Long non-coding RNAs: modulators of nuclear structure and function

(2013) Jan H Bergmann et al.   CURRENT OPINION IN CELL BIOLOGY

Dogma Derailed: The Many Influences of RNA on the Genome

(2013) Leah R. Sabin et al.   MOLECULAR CELL

Mechanisms of Small RNA Generation from Cis-NATs in Response to Environmental and Developmental Cues

(2013) Xiaoming Zhang et al.   Molecular Plant

High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation

(2013) Matthew D. Simon et al.   NATURE

Long non-coding RNAs: new players in cell differentiation and development

(2013) Alessandro Fatica et al.   NATURE REVIEWS GENETICS

A Rice cis-Natural Antisense RNA Acts as a Translational Enhancer for Its Cognate mRNA and Contributes to Phosphate Homeostasis and Plant Fitness

(2013) M. Jabnoune et al.   PLANT CELL

The Xist lncRNA Exploits Three-Dimensional Genome Architecture to Spread Across the X Chromosome

(2013) J. M. Engreitz et al.   SCIENCE

The Plant-Specific Dof Transcription Factors Family: New Players Involved in Vascular System Development and Functioning in Arabidopsis

(2013) Rozenn Le Hir et al.   Frontiers in Plant Science

Circadian Oscillations of Protein-Coding and Regulatory RNAs in a Highly Dynamic Mammalian Liver Epigenome

(2012) Christopher Vollmers et al.   Cell Metabolism

Vernalization - a cold-induced epigenetic switch

(2012) J. Song et al.   JOURNAL OF CELL SCIENCE

Rhythmic oscillation of histone acetylation and methylation at the Arabidopsis central clock loci

(2012) Hae-Ryong Song et al.   MOLECULES AND CELLS

Circadian Clock Regulates Dynamic Chromatin Modifications Associated with Arabidopsis CCA1/LHY and TOC1 Transcriptional Rhythms

(2012) Hans Hemmes et al.   PLANT AND CELL PHYSIOLOGY

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production

(2012) Chongyuan Luo et al.   PLANT JOURNAL

Ordered changes in histone modifications at the core of the Arabidopsis circadian clock

(2012) J. Malapeira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circadian changes in long noncoding RNAs in the pineal gland

(2012) S. L. Coon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional repressor PRR5 directly regulates clock-output pathways

(2012) N. Nakamichi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FKF1 Conveys Timing Information for CONSTANS Stabilization in Photoperiodic Flowering

(2012) Y. H. Song et al.   SCIENCE

Epigenetic Regulation by Long Noncoding RNAs

(2012) J. T. Lee   SCIENCE

Flowering time control: another window to the connection between antisense RNA and chromatin

(2012) Robert Ietswaart et al.   TRENDS IN GENETICS

Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts

(2012) Marco Magistri et al.   TRENDS IN GENETICS

TEMPRANILLO genes link photoperiod and gibberellin pathways to control flowering in Arabidopsis

(2012) Michela Osnato et al.   Nature Communications

Arabidopsis DRB4 protein in antiviral defense against Turnip yellow mosaic virus infection

(2011) Anna Jakubiec et al.   PLANT JOURNAL

Circadian Control of Global Gene Expression Patterns

(2010) Colleen J. Doherty et al.   Annual Review of Genetics

JTK_CYCLE: An Efficient Nonparametric Algorithm for Detecting Rhythmic Components in Genome-Scale Data Sets

(2010) Michael E. Hughes et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA

(2010) J. B. Heo et al.   SCIENCE

Arabidopsis DOF Transcription Factors Act Redundantly to Reduce CONSTANS Expression and Are Essential for a Photoperiodic Flowering Response

(2009) Fabio Fornara et al.   DEVELOPMENTAL CELL

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

(2009) Szymon Swiezewski et al.   NATURE

Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays

(2009) Samuel P Hazen et al.   GENOME BIOLOGY

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

(2008) Taiowa A. Montgomery et al.   CELL

Small-interfering RNAs from natural antisense transcripts derived from a cellulose synthase gene modulate cell wall biosynthesis in barley

(2008) M. A. Held et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA