EXPath 2.0: An Updated Database for Integrating High-Throughput Gene Expression Data with Biological Pathways
出版年份 2020 全文链接
标题
EXPath 2.0: An Updated Database for Integrating High-Throughput Gene Expression Data with Biological Pathways
作者
关键词
-
出版物
PLANT AND CELL PHYSIOLOGY
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2020-08-28
DOI
10.1093/pcp/pcaa115
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato
- (2018) Xuemin Ma et al. PLANT PHYSIOLOGY
- Transcriptome and Co-Expression Network Analyses Identify Key Genes Regulating Nitrogen Use Efficiency in Brassica juncea L.
- (2018) Parul Goel et al. Scientific Reports
- Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion
- (2018) Shanrong Zhao et al. Scientific Reports
- PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants
- (2018) Chi-Nga Chow et al. NUCLEIC ACIDS RESEARCH
- A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing
- (2017) Runxuan Zhang et al. NUCLEIC ACIDS RESEARCH
- A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants
- (2017) Jennifer H. Wisecaver et al. PLANT CELL
- Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice
- (2017) Huong Mai Nguyen et al. Frontiers in Plant Science
- The Plant Heat Stress Transcription Factors (HSFs): Structure, Regulation, and Function in Response to Abiotic Stresses
- (2016) Meng Guo et al. Frontiers in Plant Science
- EXPath: a database of comparative expression analysis inferring metabolic pathways for plants
- (2015) Chia-Hung Chien et al. BMC GENOMICS
- PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants
- (2015) Chi-Nga Chow et al. NUCLEIC ACIDS RESEARCH
- Unbalanced Activation of Glutathione Metabolic Pathways Suggests Potential Involvement in Plant Defense against the Gall Midge Mayetiola destructor in Wheat
- (2015) Xuming Liu et al. Scientific Reports
- Shared and unique responses of plants to multiple individual stresses and stress combinations: physiological and molecular mechanisms
- (2015) Prachi Pandey et al. Frontiers in Plant Science
- Transcriptional regulation of drought response: a tortuous network of transcriptional factors
- (2015) Dhriti Singh et al. Frontiers in Plant Science
- AlgaePath: comprehensive analysis of metabolic pathways using transcript abundance data from next-generation sequencing in green algae
- (2014) Han-Qin Zheng et al. BMC GENOMICS
- MTGD: The Medicago truncatula Genome Database
- (2014) Vivek Krishnakumar et al. PLANT AND CELL PHYSIOLOGY
- Pathway Processor 2.0: a web resource for pathway-based analysis of high-throughput data
- (2013) Luca Beltrame et al. BIOINFORMATICS
- Transcriptome-wide profiling and expression analysis of transcription factor families in a liverwort, Marchantia polymorpha
- (2013) Niharika Sharma et al. BMC GENOMICS
- Data, information, knowledge and principle: back to metabolism in KEGG
- (2013) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice
- (2013) Mahantesha Naika et al. PLANT AND CELL PHYSIOLOGY
- Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics
- (2013) Hiroaki Sakai et al. PLANT AND CELL PHYSIOLOGY
- RiceSRTFDB: A database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis
- (2013) Pushp Priya et al. Database-The Journal of Biological Databases and Curation
- Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013
- (2013) George M. Garrity et al. Standards in Genomic Sciences
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- RiceXPro Version 3.0: expanding the informatics resource for rice transcriptome
- (2012) Yutaka Sato et al. NUCLEIC ACIDS RESEARCH
- NAC transcription factors in plant abiotic stress responses
- (2011) Kazuo Nakashima et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Microarrays, deep sequencing and the true measure of the transcriptome
- (2011) John H Malone et al. BMC BIOLOGY
- Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments
- (2011) M. Kapushesky et al. NUCLEIC ACIDS RESEARCH
- The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
- (2011) Philippe Lamesch et al. NUCLEIC ACIDS RESEARCH
- Cytoscape Web: an interactive web-based network browser
- (2010) Christian T. Lopes et al. BIOINFORMATICS
- The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl
- (2010) A. Bombarely et al. NUCLEIC ACIDS RESEARCH
- SoyBase, the USDA-ARS soybean genetics and genomics database
- (2009) David Grant et al. NUCLEIC ACIDS RESEARCH
- Gibberellin Modulates Anther Development in Rice via the Transcriptional Regulation of GAMYB
- (2009) K. Aya et al. PLANT CELL
- PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups
- (2008) Wen-Chi Chang et al. BMC GENOMICS
- The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access
- (2008) Hideki Goda et al. PLANT JOURNAL
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started