Dissemination of Internal Ribosomal Entry Sites (IRES) Between Viruses by Horizontal Gene Transfer

Discovery of Jogalong virus, a novel hepacivirus identified in a Culex annulirostris (Skuse) mosquito from the Kimberley region of Western Australia

(2020) Simon H. Williams et al.   PLoS One

A Novel Hepacivirus in Wild Rodents from South America

(2019) William de Souza et al.   Viruses-Basel

A novel picornavirus in feces of a rainbow lorikeet (Trichoglossus moluccanus) shows a close relationship to members of the genus Avihepatovirus

(2019) Haoning Wang et al.   ARCHIVES OF VIROLOGY

Picornavirus RNA Recombination Counteracts Error Catastrophe

(2019) Brian J. Kempf et al.   JOURNAL OF VIROLOGY

Genomic characterization of a novel pegivirus species from free-ranging bottlenose dolphins (Tursiops truncatus) in the Indian River Lagoon, Florida

(2019) Thaís C.S. Rodrigues et al.   VIRUS RESEARCH

Genetically highly divergent RNA virus with astrovirus-like (5′-end) and hepevirus-like (3′-end) genome organization in carnivorous birds, European roller (Coracias garrulus)

(2019) Péter Pankovics et al.   INFECTION GENETICS AND EVOLUTION

Virome heterogeneity and connectivity in waterfowl and shorebird communities

(2019) Michelle Wille et al.   ISME Journal

A highly divergent hepacivirus-like flavivirus in domestic ducks

(2019) Lili Chu et al.   JOURNAL OF GENERAL VIROLOGY

Recombination in Enteroviruses, a Multi-Step Modular Evolutionary Process

(2019) Muslin et al.   Viruses-Basel

A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites

(2019) Deepak Koirala et al.   Nature Communications

Multidecade Mortality and a Homolog of Hepatitis C Virus in Bald Eagles (Haliaeetus leucocephalus), the National Bird of the USA

(2019) Tony L. Goldberg et al.   Scientific Reports

Characterization of a Novel Simian Sapelovirus Isolated from a Cynomolgus Monkey using PLC/PRF/5 Cells

(2019) Wenjing Zhang et al.   Scientific Reports

A novel passerivirus (family Picornaviridae) in an outbreak of enteritis with high mortality in estrildid finches (Uraeginthus sp.)

(2018) Péter Pankovics et al.   ARCHIVES OF VIROLOGY

Using Metagenomics to Characterize an Expanding Virosphere

(2018) Yong-Zhen Zhang et al.   CELL

Emergency Services of Viral RNAs: Repair and Remodeling

(2018) Vadim I. Agol et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer

(2018) Valerian V. Dolja et al.   VIRUS RESEARCH

Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam

(2018) Dung Van Nguyen et al.   Viruses-Basel

Translation Termination and Ribosome Recycling in Eukaryotes

(2018) Christopher U.T. Hellen   Cold Spring Harbor Perspectives in Biology

Marmota himalayana in the Qinghai–Tibetan plateau as a special host for bi-segmented and unsegmented picobirnaviruses

(2018) Xue-lian Luo et al.   Emerging Microbes & Infections

The fecal virome of red-crowned cranes

(2018) Yan Wang et al.   ARCHIVES OF VIROLOGY

Mechanisms and consequences of positive-strand RNA virus recombination

(2018) Kirsten Bentley et al.   JOURNAL OF GENERAL VIROLOGY

Focus on Translation Initiation of the HIV-1 mRNAs

(2018) Sylvain de Breyne et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Virus-virus interactions and host ecology are associated with RNA virome structure in wild birds

(2018) Michelle Wille et al.   MOLECULAR ECOLOGY

Viral RNA structure-based strategies to manipulate translation

(2018) Zane A. Jaafar et al.   NATURE REVIEWS MICROBIOLOGY

Large-scale genomic analysis reveals recurrent patterns of intertypic recombination in human enteroviruses

(2018) Marios Nikolaidis et al.   VIROLOGY

An upstream protein-coding region in enteroviruses modulates virus infection in gut epithelial cells

(2018) Valeria Lulla et al.   Nature Microbiology

A Naturally Occurring Recombinant Enterovirus Expresses a Torovirus Deubiquitinase

(2017) Pengcheng Shang et al.   JOURNAL OF VIROLOGY

The IRES5′UTR of the dicistrovirus cricket paralysis virus is a type III IRES containing an essential pseudoknot structure

(2017) Lauriane Gross et al.   NUCLEIC ACIDS RESEARCH

Distinct roles for the IIId2 sub-domain in pestivirus and picornavirus internal ribosome entry sites

(2017) Margaret M. Willcocks et al.   NUCLEIC ACIDS RESEARCH

Cellular cap-binding protein, eIF4E, promotes picornavirus genome restructuring and translation

(2017) Brian C. Avanzino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The 5′ and 3′ Untranslated Regions of the Flaviviral Genome

(2017) Wy Ng et al.   Viruses-Basel

Structural and Functional Diversity of Plant Virus 3′-Cap-Independent Translation Enhancers (3′-CITEs)

(2017) Verónica Truniger et al.   Frontiers in Plant Science

Genetic characterization of a second novel picornavirus from an amphibian host, smooth newt (Lissotriton vulgaris)

(2016) Péter Pankovics et al.   ARCHIVES OF VIROLOGY

Ancient recombination events and the origins of hepatitis E virus

(2016) Andrew G. Kelly et al.   BMC EVOLUTIONARY BIOLOGY

RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence

(2016) Yinghong Xiao et al.   Cell Host & Microbe

Toward the mechanism of eIF4F-mediated ribosomal attachment to mammalian capped mRNAs

(2016) Parimal Kumar et al.   GENES & DEVELOPMENT

Proposed update to the taxonomy of the genera Hepacivirus and Pegivirus within the Flaviviridae family

(2016) Donald B. Smith et al.   JOURNAL OF GENERAL VIROLOGY

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

An accurately preorganized IRES RNA structure enables eIF4G capture for initiation of viral translation

(2016) Shunsuke Imai et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Attachment of ribosomal complexes and retrograde scanning during initiation on the Halastavi árva virus IRES

(2016) Irina S. Abaeva et al.   NUCLEIC ACIDS RESEARCH

RNA Structure Duplications and Flavivirus Host Adaptation

(2016) Sergio M. Villordo et al.   TRENDS IN MICROBIOLOGY

A diarrheic chicken simultaneously co-infected with multiple picornaviruses: Complete genome analysis of avian picornaviruses representing up to six genera

(2016) Ákos Boros et al.   VIROLOGY

An accurately preorganized IRES RNA structure enables eIF4G capture for initiation of viral translation

(2016) Shunsuke Imai et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Translation initiation by the hepatitis C virus IRES requires eIF1A and ribosomal complex remodeling

(2016) Zane A Jaafar et al.   eLife

A Cap-to-Tail Guide to mRNA Translation Strategies in Virus-Infected Cells

(2016) Eric Jan et al.   Annual Review of Virology

Unraveling the Mysterious Interactions Between Hepatitis C Virus RNA and Liver-Specific MicroRNA-122

(2016) Peter Sarnow et al.   Annual Review of Virology

Secondary structure analysis of swine pasivirus (family Picornaviridae) RNA reveals a type-IV IRES and a parechovirus-like 3’ UTR organization

(2015) Ákos Boros et al.   ARCHIVES OF VIROLOGY

Molecular architecture of the ribosome-bound Hepatitis C Virus internal ribosomal entry site RNA

(2015) H. Yamamoto et al.   EMBO JOURNAL

Evolutionary and Phylogenetic Analysis of the Hepaciviruses and Pegiviruses

(2015) Julien Thézé et al.   Genome Biology and Evolution

Recombination in viruses: Mechanisms, methods of study, and evolutionary consequences

(2015) Marcos Pérez-Losada et al.   INFECTION GENETICS AND EVOLUTION

Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases

(2015) Zhiqiang Wu et al.   ISME Journal

LOOP IIId of the HCV IRES is essential for the structural rearrangement of the 40S-HCV IRES complex

(2015) Jenniffer Angulo et al.   NUCLEIC ACIDS RESEARCH

Evolutionary origins of hepatitis A virus in small mammals

(2015) Jan Felix Drexler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread distribution and structural diversity of Type IV IRESs in members of Picornaviridae

(2015) Mukta Asnani et al.   VIROLOGY

Virome Analysis of Transfusion Recipients Reveals a Novel Human Virus That Shares Genomic Features with Hepaciviruses and Pegiviruses

(2015) Amit Kapoor et al.   mBio

Cryo-EM structure of Hepatitis C virus IRES bound to the human ribosome at 3.9-Å resolution

(2015) Nick Quade et al.   Nature Communications

Discovery of a Novel Human Pegivirus in Blood Associated with Hepatitis C Virus Co-Infection

(2015) Michael G. Berg et al.   PLoS Pathogens

Evolution and Emergence of Enteroviruses through Intra- and Inter-species Recombination: Plasticity and Phenotypic Impact of Modular Genetic Exchanges in the 5’ Untranslated Region

(2015) Claire Muslin et al.   PLoS Pathogens

Complete genome characterization of mosavirus (family Picornaviridae) identified in droppings of a European roller (Coracias garrulus) in Hungary

(2014) Gábor Reuter et al.   ARCHIVES OF VIROLOGY

Initiation of Translation by Cricket Paralysis Virus IRES Requires Its Translocation in the Ribosome

(2014) Israel S. Fernández et al.   CELL

Genetic characterization of a novel duck-origin picornavirus with six 2A proteins

(2014) X. Wang et al.   JOURNAL OF GENERAL VIROLOGY

Functional conservation despite structural divergence in ligand-responsive RNA switches

(2014) Mark A. Boerneke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Feline fecal virome reveals novel and prevalent enteric viruses

(2014) Terry Fei Fan Ng et al.   VETERINARY MICROBIOLOGY

Recombination among human non-polio enteroviruses: implications for epidemiology and evolution

(2014) Zaharoula Kyriakopoulou et al.   VIRUS GENES

Evolution of eukaryotic single-stranded DNA viruses of the Bidnaviridae family from genes of four other groups of widely different viruses

(2014) Mart Krupovic et al.   Scientific Reports

The mechanism of translation initiation on Type 1 picornavirus IRESs

(2013) Trevor R Sweeney et al.   EMBO JOURNAL

Genetic characterization of a novel picornavirus in turkeys (Meleagris gallopavo) distinct from turkey galliviruses and megriviruses and distantly related to the members of the genus Avihepatovirus

(2013) Ákos Boros et al.   JOURNAL OF GENERAL VIROLOGY

Genetic characterization of a novel picornavirus distantly related to the marine mammal-infecting aquamaviruses in a long-distance migrant bird species, European roller (Coracias garrulus)

(2013) A. Boros et al.   JOURNAL OF GENERAL VIROLOGY

Multiple Independent Emergences of Type 2 Vaccine-Derived Polioviruses during a Large Outbreak in Northern Nigeria

(2013) C. C. Burns et al.   JOURNAL OF VIROLOGY

Identification of a Pegivirus (GB Virus-Like Virus) That Infects Horses

(2013) A. Kapoor et al.   JOURNAL OF VIROLOGY

Hepatitis-C-virus-like internal ribosome entry sites displace eIF3 to gain access to the 40S subunit

(2013) Yaser Hashem et al.   NATURE

Interfamilial recombination between viruses led to acquisition of a novel translation-enhancing RNA element that allows resistance breaking

(2013) Manuel Miras et al.   NEW PHYTOLOGIST

Inhibition of translation by IFIT family members is determined by their ability to interact selectively with the 5'-terminal regions of cap0-, cap1- and 5'ppp- mRNAs

(2013) P. Kumar et al.   NUCLEIC ACIDS RESEARCH

HCV IRES interacts with the 18S rRNA to activate the 40S ribosome for subsequent steps of translation initiation

(2013) A. A. Malygin et al.   NUCLEIC ACIDS RESEARCH

Metagenomic Analysis of the Ferret Fecal Viral Flora

(2013) Saskia L. Smits et al.   PLoS One

Bats are a major natural reservoir for hepaciviruses and pegiviruses

(2013) P.-L. Quan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of a previously undescribed divergent virus from the Flaviviridae family in an outbreak of equine serum hepatitis

(2013) S. Chandriani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of Rodent Homologs of Hepatitis C Virus and Pegiviruses

(2013) A. Kapoor et al.   mBio

Evidence for Novel Hepaciviruses in Rodents

(2013) Jan Felix Drexler et al.   PLoS Pathogens

Natural interspecies recombinant bovine/porcine enterovirus in sheep

(2012) A. Boros et al.   JOURNAL OF GENERAL VIROLOGY

Modulation of Translation Initiation Efficiency in Classical Swine Fever Virus

(2012) Martin Barfred Friis et al.   JOURNAL OF VIROLOGY

Virome Analysis for Identification of Novel Mammalian Viruses in Bat Species from Chinese Provinces

(2012) Z. Wu et al.   JOURNAL OF VIROLOGY

Two Closely Related Novel Picornaviruses in Cattle and Sheep in Hungary from 2008 to 2009, Proposed as Members of a New Genus in the Family Picornaviridae

(2012) G. Reuter et al.   JOURNAL OF VIROLOGY

Glycyl-tRNA synthetase specifically binds to the poliovirus IRES to activate translation initiation

(2012) Dmitri E. Andreev et al.   NUCLEIC ACIDS RESEARCH

Novel picornavirus in domesticated common quail (Coturnix coturnix) in Hungary

(2011) Péter Pankovics et al.   ARCHIVES OF VIROLOGY

The mechanism of translation initiation on Aichivirus RNA mediated by a novel type of picornavirus IRES

(2011) Yingpu Yu et al.   EMBO JOURNAL

Experimental human rhinovirus and enterovirus interspecies recombination

(2011) M. Schibler et al.   JOURNAL OF GENERAL VIROLOGY

Identification of a Novel Feline Picornavirus from the Domestic Cat

(2011) S. K. P. Lau et al.   JOURNAL OF VIROLOGY

Complete Genome Analysis of Three Novel Picornaviruses from Diverse Bat Species

(2011) S. K. P. Lau et al.   JOURNAL OF VIROLOGY

Structural Features of the Seneca Valley Virus Internal Ribosome Entry Site (IRES) Element: a Picornavirus with a Pestivirus-Like IRES

(2011) M. M. Willcocks et al.   JOURNAL OF VIROLOGY

Duck Hepatitis A Virus Possesses a Distinct Type IV Internal Ribosome Entry Site Element of Picornavirus

(2011) M. Pan et al.   JOURNAL OF VIROLOGY

A Distinct Class of Internal Ribosomal Entry Site in Members of the Kobuvirus and Proposed Salivirus and Paraturdivirus Genera of the Picornaviridae

(2011) T. R. Sweeney et al.   JOURNAL OF VIROLOGY

Why do RNA viruses recombine?

(2011) Etienne Simon-Loriere et al.   NATURE REVIEWS MICROBIOLOGY

Common conformational changes induced in type 2 picornavirus IRESs by cognate trans-acting factors

(2011) Y. Yu et al.   NUCLEIC ACIDS RESEARCH

Screening of Feral and Wood Pigeons for Viruses Harbouring a Conserved Mobile Viral Element: Characterization of Novel Astroviruses and Picornaviruses

(2011) Tone Kofstad et al.   PLoS One

Crystal Structure of the HCV IRES Central Domain Reveals Strategy for Start-Codon Positioning

(2011) Katherine E. Berry et al.   STRUCTURE

Human Enterovirus 109: a Novel Interspecies Recombinant Enterovirus Isolated from a Case of Acute Pediatric Respiratory Illness in Nicaragua

(2010) N. L. Yozwiak et al.   JOURNAL OF VIROLOGY

Analysis of Genetic Diversity and Sites of Recombination in Human Rhinovirus Species C

(2010) C. L. McIntyre et al.   JOURNAL OF VIROLOGY

The mechanism of eukaryotic translation initiation and principles of its regulation

(2010) Richard J. Jackson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Comprehensive full-length sequence analyses of human parechoviruses: diversity and recombination

(2009) K. S. M. Benschop et al.   JOURNAL OF GENERAL VIROLOGY

Identification of Potential Recombination Breakpoints in Human Parechoviruses

(2009) J. Zoll et al.   JOURNAL OF VIROLOGY

Recombination, Reservoirs, and the Modular Spike: Mechanisms of Coronavirus Cross-Species Transmission

(2009) R. L. Graham et al.   JOURNAL OF VIROLOGY

Conserved functional domains and a novel tertiary interaction near the pseudoknot drive translational activity of hepatitis C virus and hepatitis C virus-like internal ribosome entry sites

(2009) Laura E. Easton et al.   NUCLEIC ACIDS RESEARCH

Direct functional interaction of initiation factor eIF4G with type 1 internal ribosomal entry sites

(2009) S. de Breyne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae

(2008) Gábor Reuter et al.   ARCHIVES OF VIROLOGY

eIF2-dependent and eIF2-independent modes of initiation on the CSFV IRES: a common role of domain II

(2008) Tatyana V Pestova et al.   EMBO JOURNAL

Eukaryotic translation initiation machinery can operate in a bacterial-like mode without eIF2

(2008) Ilya M Terenin et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structure and function of HCV IRES domains

(2008) Peter J. Lukavsky   VIRUS RESEARCH