A unified view of the sequence and functional organization of the human RNA polymerase II promoter
出版年份 2020 全文链接
标题
A unified view of the sequence and functional organization of the human RNA polymerase II promoter
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2020-06-25
DOI
10.1093/nar/gkaa531
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- TFIID Enables RNA Polymerase II Promoter-Proximal Pausing
- (2020) Charli B. Fant et al. MOLECULAR CELL
- Nucleotide Resolution Comparison of Transcription of Human Cytomegalovirus and Host Genomes Reveals Universal Use of RNA Polymerase II Elongation Control Driven by Dissimilar Core Promoter Elements
- (2019) Mrutyunjaya Parida et al. mBio
- Use of the nuclear walk-on methodology to determine sites of RNA polymerase II initiation and pausing and quantify nascent RNAs in cells
- (2019) Christopher B. Ball et al. METHODS
- Promoter-proximal pausing of RNA polymerase II: a nexus of gene regulation
- (2019) Leighton Core et al. GENES & DEVELOPMENT
- The RNA Polymerase II Core Promoter in Drosophila
- (2019) Long Vo Ngoc et al. GENETICS
- Reporter-ChIP-nexus reveals strong contribution of the Drosophila initiator sequence to RNA polymerase pausing
- (2019) Wanqing Shao et al. eLife
- Promoter Recognition: Putting TFIID on the Spot
- (2019) Tanja Bhuiyan et al. TRENDS IN CELL BIOLOGY
- Eukaryotic core promoters and the functional basis of transcription initiation
- (2018) Vanja Haberle et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Live-cell analysis of endogenous GFP-RPB1 uncovers rapid turnover of initiating and promoter-paused RNA Polymerase II
- (2018) Barbara Steurer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure of paused transcription complex Pol II–DSIF–NELF
- (2018) Seychelle M. Vos et al. NATURE
- Promoter Distortion and Opening in the RNA Polymerase II Cleft
- (2018) Christian Dienemann et al. MOLECULAR CELL
- Single-molecule nascent RNA sequencing identifies regulatory domain architecture at promoters and enhancers
- (2018) Jacob M. Tome et al. NATURE GENETICS
- Structure of human TFIID and mechanism of TBP loading onto promoter DNA
- (2018) Avinash B. Patel et al. SCIENCE
- The punctilious RNA polymerase II core promoter
- (2017) Long Vo ngoc et al. GENES & DEVELOPMENT
- Finding the start site: redefining the human initiator element
- (2017) Jennifer F. Kugel et al. GENES & DEVELOPMENT
- The human initiator is a distinct and abundant element that is precisely positioned in focused core promoters
- (2017) Long Vo ngoc et al. GENES & DEVELOPMENT
- Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction
- (2017) Britta Mueller et al. GENES & DEVELOPMENT
- Transcription and Remodeling Produce Asymmetrically Unwrapped Nucleosomal Intermediates
- (2017) Srinivas Ramachandran et al. MOLECULAR CELL
- Structures of transcription pre-initiation complex with TFIIH and Mediator
- (2017) S. Schilbach et al. NATURE
- Structure of a transcribing RNA polymerase II–DSIF complex reveals a multidentate DNA–RNA clamp
- (2017) Carrie Bernecky et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A sequence-specific core promoter-binding transcription factor recruits TRF2 to coordinately transcribe ribosomal protein genes
- (2017) Douglas G. Baumann et al. NUCLEIC ACIDS RESEARCH
- Oxidative stress rapidly stabilizes promoter-proximal paused Pol II across the human genome
- (2017) Kyle A. Nilson et al. NUCLEIC ACIDS RESEARCH
- Genome-wide Mapping of the Nucleosome Landscape by Micrococcal Nuclease and Chemical Mapping
- (2017) Lilien N. Voong et al. TRENDS IN GENETICS
- Structure of a transcribing RNA polymerase II–DSIF complex reveals a multidentate DNA–RNA clamp
- (2017) Carrie Bernecky et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Hydrogen peroxide yields mechanistic insights into human mRNA capping enzyme function
- (2017) Nicholas J. Mullen et al. PLoS One
- Zooming in on Transcription Preinitiation
- (2016) Kapil Gupta et al. JOURNAL OF MOLECULAR BIOLOGY
- Structure of promoter-bound TFIID and model of human pre-initiation complex assembly
- (2016) Robert K. Louder et al. NATURE
- Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters
- (2016) Yun Chen et al. NATURE GENETICS
- MNase titration reveals differences between nucleosome occupancy and chromatin accessibility
- (2016) Jakub Mieczkowski et al. Nature Communications
- Influence of Rotational Nucleosome Positioning on Transcription Start Site Selection in Animal Promoters
- (2016) René Dreos et al. PLoS Computational Biology
- Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin
- (2015) Benjamin S. Scruggs et al. MOLECULAR CELL
- Uncoupling Promoter Opening from Start-Site Scanning
- (2015) Kenji Murakami et al. MOLECULAR CELL
- Real-time observation of the initiation of RNA polymerase II transcription
- (2015) Furqan M. Fazal et al. NATURE
- A positioned +1 nucleosome enhances promoter-proximal pausing
- (2015) Silvia Jimeno-González et al. NUCLEIC ACIDS RESEARCH
- MPE-seq, a new method for the genome-wide analysis of chromatin structure
- (2015) Haruhiko Ishii et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Core promoters in transcription: old problem, new insights
- (2015) Ananda L. Roy et al. TRENDS IN BIOCHEMICAL SCIENCES
- TRF2, but not TBP, mediates the transcription of ribosomal protein genes
- (2014) Y.-L. Wang et al. GENES & DEVELOPMENT
- Nucleosomes Are Context-Specific, H2A.Z-Modulated Barriers to RNA Polymerase
- (2014) Christopher M. Weber et al. MOLECULAR CELL
- Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
- (2014) Leighton J Core et al. NATURE GENETICS
- A pause sequence enriched at translation start sites drives transcription dynamics in vivo
- (2014) M. H. Larson et al. SCIENCE
- Chromatin and DNA sequences in defining promoters for transcription initiation
- (2013) Ferenc Müller et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- H3K4me3 Interactions with TAF3 Regulate Preinitiation Complex Assembly and Selective Gene Activation
- (2013) Shannon M. Lauberth et al. CELL
- Structural visualization of key steps in human transcription initiation
- (2013) Yuan He et al. NATURE
- Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing
- (2013) H. Kwak et al. SCIENCE
- Coupling polymerase pausing and chromatin landscapes for precise regulation of transcription
- (2012) Daniel A. Gilchrist et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Genome-wide structure and organization of eukaryotic pre-initiation complexes
- (2012) Ho Sung Rhee et al. NATURE
- Controls of Nucleosome Positioning in the Human Genome
- (2012) Daniel J. Gaffney et al. PLoS Genetics
- Transcription Initiation Patterns Indicate Divergent Strategies for Gene Regulation at the Chromatin Level
- (2011) Elizabeth A. Rach et al. PLoS Genetics
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery
- (2010) T. J. Parry et al. GENES & DEVELOPMENT
- The TATA box regulates TATA-binding protein (TBP) dynamics in vivo
- (2010) Laszlo Tora et al. TRENDS IN BIOCHEMICAL SCIENCES
- Regulation of gene expression via the core promoter and the basal transcriptional machinery
- (2009) Tamar Juven-Gershon et al. DEVELOPMENTAL BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
- (2008) T. N. Mavrich et al. GENOME RESEARCH
- Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
- (2008) D. A. Hendrix et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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