Single-molecule nascent RNA sequencing identifies regulatory domain architecture at promoters and enhancers
出版年份 2018 全文链接
标题
Single-molecule nascent RNA sequencing identifies regulatory domain architecture at promoters and enhancers
作者
关键词
-
出版物
NATURE GENETICS
Volume 50, Issue 11, Pages 1533-1541
出版商
Springer Nature America, Inc
发表日期
2018-10-12
DOI
10.1038/s41588-018-0234-5
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Widespread transcriptional pausing and elongation control at enhancers
- (2018) Telmo Henriques et al. GENES & DEVELOPMENT
- Born to run: control of transcription elongation by RNA polymerase II
- (2018) Fei Xavier Chen et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements
- (2018) Bo Gu et al. SCIENCE
- Atomic structures of low-complexity protein segments reveal kinked β sheets that assemble networks
- (2018) Michael P. Hughes et al. SCIENCE
- Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II
- (2018) Huasong Lu et al. NATURE
- The punctilious RNA polymerase II core promoter
- (2017) Long Vo ngoc et al. GENES & DEVELOPMENT
- YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment
- (2017) Jonathan A. Beagan et al. GENOME RESEARCH
- Genome-wide Single-Molecule Footprinting Reveals High RNA Polymerase II Turnover at Paused Promoters
- (2017) Arnaud R. Krebs et al. MOLECULAR CELL
- Paused RNA polymerase II inhibits new transcriptional initiation
- (2017) Wanqing Shao et al. NATURE GENETICS
- Transcriptional response to stress is pre-wired by promoter and enhancer architecture
- (2017) Anniina Vihervaara et al. Nature Communications
- CDK9-dependent RNA polymerase II pausing controls transcription initiation
- (2017) Saskia Gressel et al. eLife
- Mammalian Heat Shock Response and Mechanisms Underlying Its Genome-wide Transcriptional Regulation
- (2016) Dig B. Mahat et al. MOLECULAR CELL
- Structure of transcribing mammalian RNA polymerase II
- (2016) Carrie Bernecky et al. NATURE
- Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells
- (2016) Maud de Dieuleveult et al. NATURE
- Local regulation of gene expression by lncRNA promoters, transcription and splicing
- (2016) Jesse M. Engreitz et al. NATURE
- Genome-wide mapping of autonomous promoter activity in human cells
- (2016) Joris van Arensbergen et al. NATURE BIOTECHNOLOGY
- Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters
- (2016) Yun Chen et al. NATURE GENETICS
- Histone H3 globular domain acetylation identifies a new class of enhancers
- (2016) Madapura M Pradeepa et al. NATURE GENETICS
- Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)
- (2016) Dig Bijay Mahat et al. Nature Protocols
- mRNA capping: biological functions and applications
- (2016) Anand Ramanathan et al. NUCLEIC ACIDS RESEARCH
- Transcriptional termination in mammals: Stopping the RNA polymerase II juggernaut
- (2016) N. J. Proudfoot SCIENCE
- TT-seq maps the human transient transcriptome
- (2016) Björn Schwalb et al. SCIENCE
- Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters
- (2016) Christopher A. Lavender et al. PLoS Genetics
- Native Elongating Transcript Sequencing Reveals Human Transcriptional Activity at Nucleotide Resolution
- (2015) Andreas Mayer et al. CELL
- Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing
- (2015) Takayuki Nojima et al. CELL
- Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin
- (2015) Benjamin S. Scruggs et al. MOLECULAR CELL
- Human Promoters Are Intrinsically Directional
- (2015) Sascha H.C. Duttke et al. MOLECULAR CELL
- THZ1 Reveals Roles for Cdk7 in Co-transcriptional Capping and Pausing
- (2015) Kyle A. Nilson et al. MOLECULAR CELL
- High-throughput determination of RNA structure by proximity ligation
- (2015) Vijay Ramani et al. NATURE BIOTECHNOLOGY
- Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes
- (2015) Kaifu Chen et al. NATURE GENETICS
- Structural basis of transcription initiation by RNA polymerase II
- (2015) Sarah Sainsbury et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency
- (2014) Bérénice A. Benayoun et al. CELL
- Kinetics of promoter Pol II on Hsp70 reveal stable pausing and key insights into its regulation
- (2014) M. S. Buckley et al. GENES & DEVELOPMENT
- Nucleosomes Are Context-Specific, H2A.Z-Modulated Barriers to RNA Polymerase
- (2014) Christopher M. Weber et al. MOLECULAR CELL
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
- (2014) Leighton J Core et al. NATURE GENETICS
- Elimination of Ligation Dependent Artifacts in T4 RNA Ligase to Achieve High Efficiency and Low Bias MicroRNA Capture
- (2014) Yunke Song et al. PLoS One
- Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
- (2014) Iris Jonkers et al. eLife
- H3K4me3 Interactions with TAF3 Regulate Preinitiation Complex Assembly and Selective Gene Activation
- (2013) Shannon M. Lauberth et al. CELL
- Cap Completion and C-Terminal Repeat Domain Kinase Recruitment Underlie the Initiation-Elongation Transition of RNA Polymerase II
- (2013) M. Lidschreiber et al. MOLECULAR AND CELLULAR BIOLOGY
- Kinetic Competition between Elongation Rate and Binding of NELF Controls Promoter-Proximal Pausing
- (2013) Jian Li et al. MOLECULAR CELL
- Stable Pausing by RNA Polymerase II Provides an Opportunity to Target and Integrate Regulatory Signals
- (2013) Telmo Henriques et al. MOLECULAR CELL
- Promoter directionality is controlled by U1 snRNP and polyadenylation signals
- (2013) Albert E. Almada et al. NATURE
- Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing
- (2013) H. Kwak et al. SCIENCE
- Architecture of an RNA Polymerase II Transcription Pre-Initiation Complex
- (2013) K. Murakami et al. SCIENCE
- Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans
- (2012) Karen Adelman et al. NATURE REVIEWS GENETICS
- Pausing of RNA Polymerase II Disrupts DNA-Specified Nucleosome Organization to Enable Precise Gene Regulation
- (2010) Daniel A. Gilchrist et al. CELL
- Analysis of the Size Distributions of Fetal and Maternal Cell-Free DNA by Paired-End Sequencing
- (2010) H. C. Fan et al. CLINICAL CHEMISTRY
- Detection of Mycoplasma in cell cultures
- (2010) Lesley Young et al. Nature Protocols
- Histone modification levels are predictive for gene expression
- (2010) R. Karlic et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Defining mechanisms that regulate RNA polymerase II transcription in vivo
- (2009) Nicholas J. Fuda et al. NATURE
- A census of human transcription factors: function, expression and evolution
- (2009) Juan M. Vaquerizas et al. NATURE REVIEWS GENETICS
- Global Analysis of Short RNAs Reveals Widespread Promoter-Proximal Stalling and Arrest of Pol II in Drosophila
- (2009) S. Nechaev et al. SCIENCE
- NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly
- (2008) D. A. Gilchrist et al. GENES & DEVELOPMENT
- Divergent Transcription from Active Promoters
- (2008) Amy C. Seila et al. SCIENCE
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
- Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation
- (2008) Sushma Shivaswamy et al. PLOS BIOLOGY
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