Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma

CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes

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Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage

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Single-Cell Transcriptome Analyses Reveal Endothelial Cell Heterogeneity in Tumors and Changes following Antiangiogenic Treatment

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Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment

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Integrating single-cell transcriptomic data across different conditions, technologies, and species

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Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing

(2018) Xinyi Guo et al.   NATURE MEDICINE

Understanding the tumor immune microenvironment (TIME) for effective therapy

(2018) Mikhail Binnewies et al.   NATURE MEDICINE

Phenotype molding of stromal cells in the lung tumor microenvironment

(2018) Diether Lambrechts et al.   NATURE MEDICINE

Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway

(2018) Tsing-Lee Tang-Huau et al.   Nature Communications

Single-Cell Deconvolution of Fibroblast Heterogeneity in Mouse Pulmonary Fibrosis

(2018) Ting Xie et al.   Cell Reports

Current landscape and future of dual anti-CTLA4 and PD-1/PD-L1 blockade immunotherapy in cancer; lessons learned from clinical trials with melanoma and non-small cell lung cancer (NSCLC)

(2018) Young Kwang Chae et al.   Journal for ImmunoTherapy of Cancer

A molecular atlas of cell types and zonation in the brain vasculature

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Human germinal center transcriptional programs are de-synchronized in B cell lymphoma

(2018) Pierre Milpied et al.   NATURE IMMUNOLOGY

The Tumor Vascular Endothelium as Decision Maker in Cancer Therapy

(2018) Diana Klein   Frontiers in Oncology

Oncofoetal insulin receptor isoform A marks the tumour endothelium; an underestimated pathway during tumour angiogenesis and angiostatic treatment

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Single-cell reconstruction of the early maternal–fetal interface in humans

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Monocyte-derived alveolar macrophages drive lung fibrosis and persist in the lung over the life span

(2017) Alexander V. Misharin et al.   JOURNAL OF EXPERIMENTAL MEDICINE

A single-cell survey of the small intestinal epithelium

(2017) Adam L. Haber et al.   NATURE

Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors

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Reversed graph embedding resolves complex single-cell trajectories

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SC3: consensus clustering of single-cell RNA-seq data

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Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

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Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer

(2017) Woosung Chung et al.   Nature Communications

Specification and Diversification of Pericytes and Smooth Muscle Cells from Mesenchymoangioblasts

(2017) Akhilesh Kumar et al.   Cell Reports

Antigen-Presenting Intratumoral B Cells Affect CD4 + TIL Phenotypes in Non–Small Cell Lung Cancer Patients

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Col1a1+ perivascular cells in the brain are a source of retinoic acid following stroke

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Recommendations for myeloid-derived suppressor cell nomenclature and characterization standards

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Lineage factors and differentiation states in lung cancer progression

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Comprehensive molecular profiling of lung adenocarcinoma

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Diverse cells at the origin of lung adenocarcinoma: Table 1.

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Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

(2014) A. P. Patel et al.   SCIENCE

Human Dendritic Cell Functional Specialization in Steady-State and Inflammation

(2014) Arjan Boltjes et al.   Frontiers in Immunology

Macrophage Cytokines: Involvement in Immunity and Infectious Diseases

(2014) Guillermo Arango Duque et al.   Frontiers in Immunology

Interactions between VEGFR and Notch signaling pathways in endothelial and neural cells

(2013) Jean-Leon Thomas et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

VEGF and Notch in Tip and Stalk Cell Selection

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Recent Developments in Myofibroblast Biology

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Identification of human germinal center light and dark zone cells and their relationship to human B-cell lymphomas

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Complement Protein C1q Directs Macrophage Polarization and Limits Inflammasome Activity during the Uptake of Apoptotic Cells

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Tumor microenvironment converts plasmacytoid dendritic cells into immunosuppressive/tolerogenic cells: insight into the molecular mechanisms

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The role of the myofibroblast in tumor stroma remodeling

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Why do human B cells secrete granzyme B? Insights into a novel B-cell differentiation pathway

(2012) Magdalena Hagn et al.   OncoImmunology

Apolipoprotein E Induces Antiinflammatory Phenotype in Macrophages

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Molecular Biology of Lung Cancer: Clinical Implications

(2011) Jill E. Larsen et al.   CLINICS IN CHEST MEDICINE

Human B cells differentiate into granzyme B-secreting cytotoxic B lymphocytes upon incomplete T-cell help

(2011) Magdalena Hagn et al.   IMMUNOLOGY AND CELL BIOLOGY

Evaluation of the phenotype pattern of macrophages isolated from malignant and non-malignant pleural effusions

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Granzyme B produced by human plasmacytoid dendritic cells suppresses T-cell expansion

(2009) B. Jahrsdorfer et al.   BLOOD

Brain angiogenesis in developmental and pathological processes: mechanism and therapeutic intervention in brain tumors

(2009) Woo-Young Kim et al.   FEBS Journal

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

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