An extended root phenotype: the rhizosphere, its formation and impacts on plant fitness

Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling

(2020) Elisa Korenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root Exudation of Primary Metabolites: Mechanisms and Their Roles in Plant Responses to Environmental Stimuli

(2019) Alberto Canarini et al.   Frontiers in Plant Science

The role of plant species and soil condition in the structural development of the rhizosphere

(2019) Jon R. Helliwell et al.   PLANT CELL AND ENVIRONMENT

The arbuscular mycorrhizal symbiosis regulates aquaporins activity and improves root cell water permeability in maize plants subjected to water stress

(2019) Gabriela Quiroga et al.   PLANT CELL AND ENVIRONMENT

Root phenotypes for improved nutrient capture: an underexploited opportunity for global agriculture

(2019) Jonathan P. Lynch   NEW PHYTOLOGIST

Soil microbes alter plant fitness under competition and drought

(2019) Connor R. Fitzpatrick et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Domesticated tomatoes are more vulnerable to negative plant–soil feedbacks than their wild relatives

(2019) Juli Carrillo et al.   JOURNAL OF ECOLOGY

Metabolic regulation of the maize rhizobiome by benzoxazinoids

(2019) T. E. Anne Cotton et al.   ISME Journal

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

(2019) Jingying Zhang et al.   NATURE BIOTECHNOLOGY

The Age of Coumarins in Plant–Microbe Interactions

(2019) Ioannis A Stringlis et al.   PLANT AND CELL PHYSIOLOGY

Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome

(2019) Mathias J. E. E. E. Voges et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial spatial footprint as a driver of soil carbon stabilization

(2019) A. N. Kravchenko et al.   Nature Communications

Microbiota-mediated disease resistance in plants

(2019) Nathan Vannier et al.   PLoS Pathogens

Nitrate transporter 1.1 alleviates Pb toxicity in Arabidopsis by preventing rhizosphere acidification

(2019) Jun Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Viruses in the phytobiome

(2019) Marilyn J Roossinck   Current Opinion in Virology

Genomic and metabolic differences between Pseudomonas putida populations inhabiting sugarcane rhizosphere or bulk soil

(2019) Lucas Dantas Lopes et al.   PLoS One

The root endophytic fungus Trichoderma atroviride induces foliar herbivory resistance in maize plants

(2018) Hexon Angel Contreras-Cornejo et al.   APPLIED SOIL ECOLOGY

Symbiotic nitrogen fixation by rhizobia — the roots of a success story

(2018) Catherine Masson-Boivin et al.   CURRENT OPINION IN PLANT BIOLOGY

The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche

(2018) C. A. Mallon et al.   ISME Journal

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Physics and hydraulics of the rhizosphere network

(2018) Pascal Benard et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

Identification of chemotaxis compounds in root exudates and their sensing chemoreceptors in plant growth-promoting rhizobacteria Bacillus amyloliquefaciens SQR9

(2018) Haichao Feng et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Rhizobia: from saprophytes to endosymbionts

(2018) Philip Poole et al.   NATURE REVIEWS MICROBIOLOGY

Plant roots redesign the rhizosphere to alter the three-dimensional physical architecture and water dynamics

(2018) Sheikh M. F. Rabbi et al.   NEW PHYTOLOGIST

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health

(2018) Ioannis A. Stringlis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil microorganisms exhibit enzymatic and priming response to root mucilage under drought

(2018) Mutez Ali Ahmed et al.   SOIL BIOLOGY & BIOCHEMISTRY

The ‘Neglected’ Soil Virome – Potential Role and Impact

(2018) Akbar Adjie Pratama et al.   TRENDS IN MICROBIOLOGY

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Effects of Mucilage on Rhizosphere Hydraulic Functions Depend on Soil Particle Size

(2018) Eva Kroener et al.   VADOSE ZONE JOURNAL

Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice

(2018) Joseph A. Edwards et al.   PLOS BIOLOGY

Design of synthetic bacterial communities for predictable plant phenotypes

(2018) Sur Herrera Paredes et al.   PLOS BIOLOGY

Rhizosphere Protists Change Metabolite Profiles in Zea mays

(2018) Anke Kuppardt et al.   Frontiers in Microbiology

Drought Stress and Root-Associated Bacterial Communities

(2018) Dan Naylor et al.   Frontiers in Plant Science

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Rhizosheath formation and involvement in foxtail millet (Setaria italica ) root growth under drought stress

(2018) Tie-Yuan Liu et al.   Journal of Integrative Plant Biology

Abiotic and biotic factors affecting crop seed germination and seedling emergence: a conceptual framework

(2018) Jay Ram Lamichhane et al.   PLANT AND SOIL

Root exudates drive the soil-borne legacy of aboveground pathogen infection

(2018) Jun Yuan et al.   Microbiome

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

Rhizosphere microbiome structure alters to enable wilt resistance in tomato

(2018) Min-Jung Kwak et al.   NATURE BIOTECHNOLOGY

Imaging microstructure of the barley rhizosphere: particle packing and root hair influences

(2018) Nicolai Koebernick et al.   NEW PHYTOLOGIST

Review: Arbuscular mycorrhizas as key players in sustainable plant phosphorus acquisition: An overview on the mechanisms involved

(2018) Nuria Ferrol et al.   PLANT SCIENCE

Protists: Puppet Masters of the Rhizosphere Microbiome

(2018) Zhilei Gao et al.   TRENDS IN PLANT SCIENCE

Rhizosphere microorganisms can influence the timing of plant flowering

(2018) Tao Lu et al.   Microbiome

Carbon input by roots into the soil: Quantification of rhizodeposition from root to ecosystem scale

(2017) Johanna Pausch et al.   GLOBAL CHANGE BIOLOGY

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits

(2017) Juan E Pérez-Jaramillo et al.   ISME Journal

Looking at past domestication to secure ecosystem services of future croplands

(2017) Ruben Milla et al.   JOURNAL OF ECOLOGY

Measurement of micro-scale soil deformation around roots using four-dimensional synchrotron tomography and image correlation

(2017) S. D. Keyes et al.   Journal of the Royal Society Interface

Root microbiota drive direct integration of phosphate stress and immunity

(2017) Gabriel Castrillo et al.   NATURE

High-resolution synchrotron imaging shows that root hairs influence rhizosphere soil structure formation

(2017) Nicolai Koebernick et al.   NEW PHYTOLOGIST

Opportunities for mobilizing recalcitrant phosphorus from agricultural soils: a review

(2017) Daniel Menezes-Blackburn et al.   PLANT AND SOIL

Plant exudates improve the mechanical conditions for root penetration through compacted soils

(2017) E. Oleghe et al.   PLANT AND SOIL

Liquid bridges at the root-soil interface

(2017) Andrea Carminati et al.   PLANT AND SOIL

Interdependency of efficient nodulation and arbuscular mycorrhization in Piptadenia gonoacantha, a Brazilian legume tree

(2017) Caroline Bournaud et al.   PLANT CELL AND ENVIRONMENT

Response and interaction of Bradyrhizobium japonicum and arbuscular mycorrhizal fungi in the soybean rhizosphere

(2017) Ram Swaroop Meena et al.   PLANT GROWTH REGULATION

Live imaging of root–bacteria interactions in a microfluidics setup

(2017) Hassan Massalha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Steering Soil Microbiomes to Suppress Aboveground Insect Pests

(2017) Ana Pineda et al.   TRENDS IN PLANT SCIENCE

Alleviation of Heavy Metal Stress in Plants and Remediation of Soil by Rhizosphere Microorganisms

(2017) Jitendra Mishra et al.   Frontiers in Microbiology

Pearl Millet Genetic Traits Shape Rhizobacterial Diversity and Modulate Rhizosphere Aggregation

(2017) Papa M. S. Ndour et al.   Frontiers in Plant Science

Application of Endophytic Pseudomonas fluorescens and a Bacterial Consortium to Brassica napus Can Increase Plant Height and Biomass under Greenhouse and Field Conditions

(2017) Richard D. Lally et al.   Frontiers in Plant Science

The Role of Soil Microorganisms in Plant Mineral Nutrition—Current Knowledge and Future Directions

(2017) Richard Jacoby et al.   Frontiers in Plant Science

The emergent rhizosphere: imaging the development of the porous architecture at the root-soil interface

(2017) J. R. Helliwell et al.   Scientific Reports

Biophysical rhizosphere processes affecting root water uptake

(2016) A. Carminati et al.   ANNALS OF BOTANY

Mapping soil deformation around plant roots using in vivo 4D X-ray Computed Tomography and Digital Volume Correlation

(2016) S.D. Keyes et al.   JOURNAL OF BIOMECHANICS

Rhizosheaths on wheat grown in acid soils: phosphorus acquisition efficiency and genetic control

(2016) Richard A. James et al.   JOURNAL OF EXPERIMENTAL BOTANY

From promise to application: root traits for enhanced nutrient capture in rice breeding

(2016) Matthias Wissuwa et al.   JOURNAL OF EXPERIMENTAL BOTANY

The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots

(2016) Larry M. York et al.   JOURNAL OF EXPERIMENTAL BOTANY

Organic acid anions: An effective defensive weapon for plants against aluminum toxicity and phosphorus deficiency in acidic soils

(2016) Zhi Chang Chen et al.   Journal of Genetics and Genomics

Plant Nitrogen Acquisition Under Low Availability: Regulation of Uptake and Root Architecture

(2016) Takatoshi Kiba et al.   PLANT AND CELL PHYSIOLOGY

Barley genotype influences stabilization of rhizodeposition-derived C and soil organic matter mineralization

(2016) Lumbani Mwafulirwa et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mechanisms of Early Microbial Establishment on Growing Root Surfaces

(2016) Lionel X. Dupuy et al.   VADOSE ZONE JOURNAL

Probiotic Diversity Enhances Rhizosphere Microbiome Function and Plant Disease Suppression

(2016) Jie Hu et al.   mBio

Is plant evolutionary history impacting recruitment of diazotrophs and nifH expression in the rhizosphere?

(2016) Marie-Lara Bouffaud et al.   Scientific Reports

Developmental Peculiarities and Seed-Borne Endophytes in Quinoa: Omnipresent, Robust Bacilli Contribute to Plant Fitness

(2016) Andrea Pitzschke   Frontiers in Microbiology

Arbuscular Mycorrhizal Fungi as Natural Biofertilizers: Let's Benefit from Past Successes

(2016) Andrea Berruti et al.   Frontiers in Microbiology

Using Ancient Traits to Convert Soil Health into Crop Yield: Impact of Selection on Maize Root and Rhizosphere Function

(2016) Jennifer E. Schmidt et al.   Frontiers in Plant Science

Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat

(2016) Akitomo Kawasaki et al.   PLoS One

Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates

(2015) Nan Zhang et al.   BMC GENOMICS

Resilience vs. historical contingency in microbial responses to environmental change

(2015) Christine V. Hawkes et al.   ECOLOGY LETTERS

A widespread plant-fungal-bacterial symbiosis promotes plant biodiversity, plant nutrition and seedling recruitment

(2015) Marcel GA van der Heijden et al.   ISME Journal

miR156 modulates rhizosphere acidification in response to phosphate limitation in Arabidopsis

(2015) Kai Jian Lei et al.   JOURNAL OF PLANT RESEARCH

Mycorrhizal ecology and evolution: the past, the present, and the future

(2015) Marcel G. A. van der Heijden et al.   NEW PHYTOLOGIST

Impact of plant domestication on rhizosphere microbiome assembly and functions

(2015) Juan E. Pérez-Jaramillo et al.   PLANT MOLECULAR BIOLOGY

Native root-associated bacteria rescue a plant from a sudden-wilt disease that emerged during continuous cropping

(2015) Rakesh Santhanam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distribution of phosphatase activity and various bacterial phyla in the rhizosphere of Hordeum vulgare L. depending on P availability

(2015) Marie Spohn et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial Invasions: The Process, Patterns, and Mechanisms

(2015) Cyrus Alexander Mallon et al.   TRENDS IN MICROBIOLOGY

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Back to Acid Soil Fields: The Citrate Transporter SbMATE Is a Major Asset for Sustainable Grain Yield for Sorghum Cultivated on Acid Soils

(2015) Geraldo Carvalho et al.   G3-Genes Genomes Genetics

Promotion of arsenic phytoextraction efficiency in the fern Pteris vittata by the inoculation of As-resistant bacteria: a soil bioremediation perspective

(2015) Silvia Lampis et al.   Frontiers in Plant Science

Associations with rhizosphere bacteria can confer an adaptive advantage to plants

(2015) Cara H. Haney et al.   Nature Plants

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative

(2014) Maggie R. Wagner et al.   ECOLOGY LETTERS

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Understanding the genetic control and physiological traits associated with rhizosheath production by barley (Hordeum vulgare)

(2014) Timothy S. George et al.   NEW PHYTOLOGIST

Bacterial seed endophytes: genera, vertical transmission and interaction with plants

(2014) Sascha Truyens et al.   Environmental Microbiology Reports

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

(2014) Natacha Bodenhausen et al.   PLoS Genetics

Role of Bacterial Communities in the Natural Suppression of Rhizoctonia solani Bare Patch Disease of Wheat (Triticum aestivum L.)

(2013) Chuntao Yin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil microbiomes vary in their ability to confer drought tolerance to Arabidopsis

(2013) Gaston Zolla et al.   APPLIED SOIL ECOLOGY

How do roots elongate in a structured soil?

(2013) Kemo Jin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior

(2013) Dayakar V. Badri et al.   NEW PHYTOLOGIST

Root Exudation of Phytochemicals in Arabidopsis Follows Specific Patterns That Are Developmentally Programmed and Correlate with Soil Microbial Functions

(2013) Jacqueline M. Chaparro et al.   PLoS One

Potential for Plant Growth Promotion of Rhizobacteria Associated withSalicorniaGrowing in Tunisian Hypersaline Soils

(2013) Francesca Mapelli et al.   Biomed Research International

Plant growth-promoting rhizobacteria and root system functioning

(2013) Jordan Vacheron et al.   Frontiers in Plant Science

Mycorrhizal phosphate uptake pathway in maize: vital for growth and cob development on nutrient poor agricultural and greenhouse soils

(2013) Martin Willmann et al.   Frontiers in Plant Science

Rhizosphere wettability decreases with root age: a problem or a strategy to increase water uptake of young roots?

(2013) Andrea Carminati   Frontiers in Plant Science

Increasing antagonistic interactions cause bacterial communities to collapse at high diversity

(2012) Joachim Becker et al.   ECOLOGY LETTERS

Microbial siderophores: a mini review

(2012) Ratul Saha et al.   JOURNAL OF BASIC MICROBIOLOGY

Widespread fitness alignment in the legume-rhizobium symbiosis

(2012) Maren L. Friesen   NEW PHYTOLOGIST

Arbuscular mycorrhizal fungi enhance photosynthesis, water use efficiency, and growth of frankincense seedlings under pulsed water availability conditions

(2012) Emiru Birhane et al.   OECOLOGIA

Rapid responses of soil microorganisms improve plant fitness in novel environments

(2012) J. A. Lau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits

(2010) A. Glyn Bengough et al.   JOURNAL OF EXPERIMENTAL BOTANY

Isolation, Characterization, and Use for Plant Growth Promotion Under Salt Stress, of ACC Deaminase-Producing Halotolerant Bacteria Derived from Coastal Soil

(2010) M. A. Siddikee   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Dynamics of soil water content in the rhizosphere

(2010) Andrea Carminati et al.   PLANT AND SOIL

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

Molecular detection and quantification of nifH gene sequences in the rhizosphere of sorghum (Sorghum bicolor) sown with two levels of nitrogen fertilizer

(2009) Marcia R.R. Coelho et al.   APPLIED SOIL ECOLOGY

Host legume-exuded antimetabolites optimize the symbiotic rhizosphere

(2009) Tao Cai et al.   MOLECULAR MICROBIOLOGY

Evaluation of synergistic effects of bacterial and cyanobacterial strains as biofertilizers for wheat

(2009) Lata Nain et al.   PLANT AND SOIL

Rhizosphere: biophysics, biogeochemistry and ecological relevance

(2009) Philippe Hinsinger et al.   PLANT AND SOIL

Carbon flow in the rhizosphere: carbon trading at the soil–root interface

(2009) D. L. Jones et al.   PLANT AND SOIL

Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms

(2009) Alan E. Richardson et al.   PLANT AND SOIL

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization

(2009) Stéphane Compant et al.   SOIL BIOLOGY & BIOCHEMISTRY

Selective progressive response of soil microbial community to wild oat roots

(2008) Kristen M DeAngelis et al.   ISME Journal

Rhizosphere bacteria help plants tolerate abiotic stress

(2008) Jungwook Yang et al.   TRENDS IN PLANT SCIENCE