Genome-wide investigation and transcriptional analysis of cytosine-5 DNA methyltransferase and DNA demethylase gene families in tea plant (Camellia sinensis) under abiotic stress and withering processing

Cloning and expression patterns of VQ-motif-containing proteins under abiotic stress in tea plant

(2019) Wei Chen et al.   PLANT GROWTH REGULATION

Tea Plant Information Archive ( TPIA ): A comprehensive genomics and bioinformatics platform for tea plant

(2019) En‐Hua Xia et al.   PLANT BIOTECHNOLOGY JOURNAL

De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

(2019) Yuqiong Guo et al.   BMC GENOMICS

Lost and Found: Return of the Inverted Repeat in the Legume Clade Defined by Its Absence

(2019) In-Su Choi et al.   Genome Biology and Evolution

Expression patterns of alpha-amylase and beta-amylase genes provide insights into the molecular mechanisms underlying the responses of tea plants (Camellia sinensis) to stress and postharvest processing treatments

(2019) Chuan Yue et al.   PLANTA

Tracing the origin and evolution history of methylation-related genes in plants

(2019) Liuling Pei et al.   BMC PLANT BIOLOGY

Dynamism in plastome structure observed across the phylogenetic tree of ferns

(2019) Samuli Lehtonen et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Three Camellia sinensis glutathione S-transferases are involved in the storage of anthocyanins, flavonols, and proanthocyanidins

(2019) Yajun Liu et al.   PLANTA

Isolation and expression analysis of CsCML genes in response to abiotic stresses in the tea plant (Camellia sinensis)

(2019) Qingping Ma et al.   Scientific Reports

A mobile restriction modification system consisting of methylases on the IncA/C plasmid

(2019) Ruibai Wang et al.   Mobile DNA

Genome-wide investigation of superoxide dismutase (SOD) gene family and their regulatory miRNAs reveal the involvement in abiotic stress and hormone response in tea plant (Camellia sinensis)

(2019) Chengzhe Zhou et al.   PLoS One

Genome-wide high-resolution mapping of DNA methylation identifies epigenetic variation across different salt stress in Maize (Zea mays L.)

(2018) Lifang Sun et al.   EUPHYTICA

Formation mechanism of the oolong tea characteristic aroma during bruising and withering treatment

(2018) Ci-Jie Hu et al.   FOOD CHEMISTRY

Study of the aroma formation and transformation during the manufacturing process of oolong tea by solid-phase micro-extraction and gas chromatography–mass spectrometry combined with chemometrics

(2018) Chengying Ma et al.   FOOD RESEARCH INTERNATIONAL

The DNA Methylome and Association of Differentially Methylated Regions with Differential Gene Expression during Heat Stress in Brassica rapa

(2018) Gaofeng Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Dynamic changes in amino acids, catechins, caffeine and gallic acid in green tea during withering

(2018) Yulong Ye et al.   JOURNAL OF FOOD COMPOSITION AND ANALYSIS

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dynamics and function of DNA methylation in plants

(2018) Huiming Zhang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Maintenance of pre-existing DNA methylation states through recurring excess-light stress

(2018) Diep R. Ganguly et al.   PLANT CELL AND ENVIRONMENT

Involvement of CsCDPK20 and CsCDPK26 in Regulation of Thermotolerance in Tea Plant (Camellia sinensis)

(2018) Mingle Wang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Draft genome sequence ofCamellia sinensisvar.sinensisprovides insights into the evolution of the tea genome and tea quality

(2018) Chaoling Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA methylome analysis provides evidence that the expansion of the tea genome is linked to TE bursts

(2018) Lei Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-Wide Characterization of DNA Demethylase Genes and Their Association with Salt Response in Pyrus

(2018) Chunxiao Liu et al.   Genes

Novel insight into the role of withering process in characteristic flavor formation of teas using transcriptome analysis and metabolite profiling

(2018) Yu Wang et al.   FOOD CHEMISTRY

Single-base-resolution methylomes of Populus euphratica reveal the association between DNA methylation and salt stress

(2018) Yutao Su et al.   Tree Genetics & Genomes

The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis

(2017) En-Hua Xia et al.   Molecular Plant

Overexpression of DEMETER, a DNA demethylase, promotes early apical bud maturation in poplar

(2017) Daniel Conde et al.   PLANT CELL AND ENVIRONMENT

Spatial and temporal expression of cytosine-5 DNA methyltransferase and DNA demethylase gene families of the Ricinus communis during seed development and drought stress

(2017) Drosou Victoria et al.   PLANT GROWTH REGULATION

Araport11: a complete reannotation of theArabidopsis thalianareference genome

(2017) Chia-Yi Cheng et al.   PLANT JOURNAL

Linking epigenetic function to electrostatics: The DNMT2 structural model example

(2017) Gilberto Cavalheiro Vieira et al.   PLoS One

The genome-wide identification and transcriptional levels of DNA methyltransferases and demethylases in globe artichoke

(2017) Silvia Gianoglio et al.   PLoS One

Age-associated alterations in DNA methylation and expression of methyltransferase and demethylase genes in Arabidopsis thaliana

(2016) Z. V. Ogneva et al.   BIOLOGIA PLANTARUM

Demethylation of ERECTA receptor genes by IBM1 histone demethylase affects stomatal development

(2016) Yuhua Wang et al.   DEVELOPMENT

Characterization of DNA methyltransferase and demethylase genes in Fragaria vesca

(2016) Tingting Gu et al.   MOLECULAR GENETICS AND GENOMICS

The role of DNA (de)methylation in immune responsiveness of Arabidopsis

(2016) Ana López Sánchez et al.   PLANT JOURNAL

Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation

(2016) Bo Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanism and biological role of Dnmt2 in Nucleic Acid Methylation

(2016) Albert Jeltsch et al.   RNA Biology

Dnmt2 is the most evolutionary conserved and enigmatic cytosine DNA methyltransferase in eukaryotes

(2016) V. V. Ashapkin et al.   RUSSIAN JOURNAL OF GENETICS

Genome-Wide Identification and Comparative Analysis of Cytosine-5 DNA Methyltransferase and Demethylase Families in Wild and Cultivated Peanut

(2016) Pengfei Wang et al.   Frontiers in Plant Science

Transcriptomic Analysis Reveals the Molecular Mechanisms of Drought-Stress-Induced Decreases in Camellia sinensis Leaf Quality

(2016) Weidong Wang et al.   Frontiers in Plant Science

Monitoring volatile compound profiles and chemical compositions during the process of manufacturing semi-fermented oolong tea

(2016) S. Y. Lin et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

N6-Methyladenine DNA Modification in Drosophila

(2015) Guoqiang Zhang et al.   CELL

Does Enzymatic Hydrolysis of Glycosidically Bound Volatile Compounds Really Contribute to the Formation of Volatile Compounds During the Oolong Tea Manufacturing Process?

(2015) Jiadong Gui et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

AtROS1 overexpression provides evidence for epigenetic regulation of genes encoding enzymes of flavonoid biosynthesis and antioxidant pathways during salt stress in transgenic tobacco

(2015) Poonam Bharti et al.   JOURNAL OF EXPERIMENTAL BOTANY

Salt-induced transcription factorMYB74is regulated by the RNA-directed DNA methylation pathway inArabidopsis

(2015) Rui Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Global Analysis Reveals the Crucial Roles of DNA Methylation during Rice Seed Development

(2015) Mei-Qing Xing et al.   PLANT PHYSIOLOGY

A DEMETER-like DNA demethylase governs tomato fruit ripening

(2015) Ruie Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Minimal evidence for consistent changes in maize DNA methylation patterns following environmental stress

(2015) Steven R. Eichten et al.   Frontiers in Plant Science

Genome-wide identification of cytosine-5 DNA methyltransferases and demethylases in Solanum lycopersicum

(2014) Dongyan Cao et al.   GENE

Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE

(2014) Jiamu Du et al.   MOLECULAR CELL

Genome-wide identification and expression profiling of DNA methyltransferase gene family in maize

(2014) Yexiong Qian et al.   PLANT CELL REPORTS

Overproduction of stomatal lineage cells in Arabidopsis mutants defective in active DNA demethylation

(2014) Chizuko Yamamuro et al.   Nature Communications

Heat-Induced Release of Epigenetic Silencing Reveals the Concealed Role of an Imprinted Plant Gene

(2014) Diego H. Sanchez et al.   PLoS Genetics

Epigenetic Dynamics: Role of Epimarks and Underlying Machinery in Plants Exposed to Abiotic Stress

(2014) Manoj Kumar Dhar et al.   International Journal of Genomics

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

(2013) Hume Stroud et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Arabidopsis ETHYLENE RESPONSE FACTOR1 Regulates Abiotic Stress-Responsive Gene Expression by Binding to Different cis-Acting Elements in Response to Different Stress Signals

(2013) M.-C. Cheng et al.   PLANT PHYSIOLOGY

Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin

(2013) Hidetoshi Saze et al.   Nature Communications

Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants

(2012) Jiamu Du et al.   CELL

CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize

(2012) J. I. Gent et al.   GENOME RESEARCH

RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis

(2012) Francesca Tuorto et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation

(2012) Satoru Moritoh et al.   PLANT JOURNAL

Regulation and function of DNA methylation in plants and animals

(2011) Xin-Jian He et al.   CELL RESEARCH

Divergent DNA Methylation Patterns Associated with Abiotic Stress in Hevea brasiliensis

(2011) Thomas K. Uthup et al.   Molecular Plant

Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte

(2011) V. K. Schoft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methylation and demethylation of the Arabidopsis genome

(2010) Ian J Furner et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Draft genome sequence of the oilseed species Ricinus communis

(2010) Agnes P Chan et al.   NATURE BIOTECHNOLOGY

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Domain structure of the DEMETER 5-methylcytosine DNA glycosylase

(2010) Y. G. Mok et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

Active DNA Demethylation Mediated by DNA Glycosylases

(2009) Jian-Kang Zhu   Annual Review of Genetics

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE

Fine control of caffeine biosynthesis in tissue cultures of Camellia sinensis

(2008) Wei-Wei Deng et al.   Phytochemistry Letters

Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks

(2008) Ana Pilar Ortega-Galisteo et al.   PLANT MOLECULAR BIOLOGY