Single-base-resolution methylomes of Populus euphratica reveal the association between DNA methylation and salt stress

Genome-wide analysis of day/night DNA methylation differences in Populus nigra

(2018) Chang-Jun Ding et al.   PLoS One

Winter-dormant shoot apical meristem in poplar trees shows environmental epigenetic memory

(2018) Anne-Laure Le Gac et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome sequence and genetic transformation of a widely distributed and cultivated poplar

(2018) Jianchao Ma et al.   PLANT BIOTECHNOLOGY JOURNAL

Changes in the epigenome and transcriptome of the poplar shoot apical meristem in response to water availability affect preferentially hormone pathways

(2017) Clément Lafon-Placette et al.   JOURNAL OF EXPERIMENTAL BOTANY

Upstream kinases of plant SnRKs are involved in salt stress tolerance

(2017) Juan de Dios Barajas-Lopez et al.   PLANT JOURNAL

Ancient polymorphisms and divergence hitchhiking contribute to genomic islands of divergence within a poplar species complex

(2017) Tao Ma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tissue-Specific Transcriptome Analysis Reveals Multiple Responses to Salt Stress in Populus euphratica Seedlings

(2017) Le Yu et al.   Genes

Sexual epigenetics: gender-specific methylation of a gene in the sex determining region of Populus balsamifera

(2017) Katharina Bräutigam et al.   Scientific Reports

Site-Dependent Differences in DNA Methylation and Their Impact on Plant Establishment and Phosphorus Nutrition in Populus trichocarpa

(2016) Brigitte Schönberger et al.   PLoS One

Methylation of microRNA genes regulates gene expression in bisexual flower development in andromonoecious poplar

(2015) Yuepeng Song et al.   JOURNAL OF EXPERIMENTAL BOTANY

ArabidopsisAtbHLH112 regulates the expression of genes involved in abiotic stress tolerance by binding to their E-box and GCG-box motifs

(2015) Yujia Liu et al.   NEW PHYTOLOGIST

Methylome analysis reveals an important role for epigenetic changes in the regulation of theArabidopsisresponse to phosphate starvation

(2015) Lenin Yong-Villalobos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Abscisic acid transporters cooperate to control seed germination

(2015) Joohyun Kang et al.   Nature Communications

Epigenetic Diversity of Clonal White Poplar (Populus alba L.) Populations: Could Methylation Support the Success of Vegetative Reproduction Strategy?

(2015) Francesco Guarino et al.   PLoS One

Increased Incidence of Mitochondrial Cytochrome C Oxidase 1 Gene Mutations in Patients with Primary Ovarian Insufficiency

(2015) Xiumei Zhen et al.   PLoS One

Transcriptome dynamics of a desert poplar (Populus pruinosa) in response to continuous salinity stress

(2014) Jian Zhang et al.   PLANT CELL REPORTS

Arabidopsis PYL8 Plays an Important Role for ABA Signaling and Drought Stress Responses

(2014) Chae Woo Lim et al.   Plant Pathology Journal

A chloroplast-localized DEAD-box RNA helicaseAtRH3 is essential for intron splicing and plays an important role in the growth and stress response in Arabidopsis thaliana

(2014) Lili Gu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Variation in Genomic Methylation in Natural Populations of Chinese White Poplar

(2013) Kaifeng Ma et al.   PLoS One

Genomic insights into salt adaptation in a desert poplar

(2013) Tao Ma et al.   Nature Communications

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression

(2012) Kelly J Vining et al.   BMC GENOMICS

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

(2012) Xin Li et al.   BMC GENOMICS

Overexpression of the wheat salt tolerance-related gene TaSC enhances salt tolerance in Arabidopsis

(2012) Xi Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Asg1 is a stress-inducible gene which increases stomatal resistance in salt stressed potato

(2012) Giorgia Batelli et al.   JOURNAL OF PLANT PHYSIOLOGY

Methylome of DNase I sensitive chromatin inPopulus trichocarpashoot apical meristematic cells: a simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state

(2012) Clément Lafon-Placette et al.   NEW PHYTOLOGIST

Arabidopsis SOS3 plays an important role in salt tolerance by mediating calcium-dependent microfilament reorganization

(2012) Jiamin Ye et al.   PLANT CELL REPORTS

Arabidopsis NRT1.5 Is Another Essential Component in the Regulation of Nitrate Reallocation and Stress Tolerance

(2012) C.-Z. Chen et al.   PLANT PHYSIOLOGY

Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes

(2012) Ratna Karan et al.   PLoS One

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Heritable alteration in DNA methylation induced by nitrogen-deficiency stress accompanies enhanced tolerance by progenies to the stress in rice (Oryza sativa L.)

(2011) H.P. Kou et al.   JOURNAL OF PLANT PHYSIOLOGY

Salt stress induces the formation of a novel type of ‘pressure wood’ in two Populus species

(2011) Dennis Janz et al.   NEW PHYTOLOGIST

Arabidopsis decuple mutant reveals the importance of SnRK2 kinases in osmotic stress responses in vivo

(2011) H. Fujii et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-scale transcriptome analysis of the desert poplar, Populus euphratica

(2011) Q. Qiu et al.   TREE PHYSIOLOGY

DNA methylation and histone acetylation: genotypic variations in hybrid poplars, impact of water deficit and relationships with productivity

(2010) Delphine Gourcilleau et al.   ANNALS OF FOREST SCIENCE

Pathway analysis of the transcriptome and metabolome of salt sensitive and tolerant poplar species reveals evolutionary adaption of stress tolerance mechanisms

(2010) Dennis Janz et al.   BMC PLANT BIOLOGY

Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.)

(2010) Wen-Sheng Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

Plant molecular stress responses face climate change

(2010) Ishita Ahuja et al.   TRENDS IN PLANT SCIENCE

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1

(2010) Ivan Baxter et al.   PLoS Genetics

Recent developments in understanding salinity tolerance

(2009) Ismail Türkan et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Human DNA methylomes at base resolution show widespread epigenomic differences

(2009) Ryan Lister et al.   NATURE

Salinity tolerance of Populus

(2009) S. Chen et al.   PLANT BIOLOGY

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE