Phage-specific metabolic reprogramming of virocells

Reannotation of the Ribonucleotide Reductase in a Cyanophage Reveals Life History Strategies Within the Virioplankton

(2019) Amelia O. Harrison et al.   Frontiers in Microbiology

(Ph)ighting Phages: How Bacteria Resist Their Parasites

(2019) Jakob T. Rostøl et al.   Cell Host & Microbe

Marine DNA Viral Macro- and Microdiversity from Pole to Pole

(2019) Ann C. Gregory et al.   CELL

Nitrogen sourcing during viral infection of marine cyanobacteria

(2019) Jacob R. Waldbauer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems

(2019) Amy E. Zimmerman et al.   NATURE REVIEWS MICROBIOLOGY

Multiple mechanisms drive phage infection efficiency in nearly identical hosts

(2018) Cristina Howard-Varona et al.   ISME Journal

A virus or more in (nearly) every cell: ubiquitous networks of virus–host interactions in extreme environments

(2018) Jacob H. Munson-McGee et al.   ISME Journal

Biological species in the viral world

(2018) Louis-Marie Bobay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomics Sheds Light on the Ecology of Marine Microbes and Their Viruses

(2018) Felipe Hernandes Coutinho et al.   TRENDS IN MICROBIOLOGY

Transcriptomic Analysis of the Campylobacter jejuni Response to T4-Like Phage NCTC 12673 Infection

(2018) Jessica Sacher et al.   Viruses-Basel

Phage puppet masters of the marine microbial realm

(2018) Mya Breitbart et al.   Nature Microbiology

The Glyoxylate Shunt, 60 Years On

(2018) Stephen K. Dolan et al.   Annual Review of Microbiology

Emergent simplicity in microbial community assembly

(2018) Joshua E. Goldford et al.   SCIENCE

From Host to Phage Metabolism: Hot Tales of Phage T4’s Takeover of E. coli

(2018) Elizabeth Kutter et al.   Viruses-Basel

Comparative transcriptomics analyses reveal the conservation of an ancestral infectious strategy in two bacteriophage genera

(2017) Bob G Blasdel et al.   ISME Journal

Lysogeny in nature: mechanisms, impact and ecology of temperate phages

(2017) Cristina Howard-Varona et al.   ISME Journal

Energetic cost of building a virus

(2017) Gita Mahmoudabadi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diel cycling and long-term persistence of viruses in the ocean’s euphotic zone

(2017) Frank O. Aylward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans

(2017) Felipe H. Coutinho et al.   Nature Communications

Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics

(2017) Simon Roux et al.   Nature Communications

Editorial: Phage Therapy: Past, Present and Future

(2017) Stephen T. Abedon et al.   Frontiers in Microbiology

Comparative Omics and Trait Analyses of Marine Pseudoalteromonas Phages Advance the Phage OTU Concept

(2017) Melissa B. Duhaime et al.   Frontiers in Microbiology

Putative archaeal viruses from the mesopelagic ocean

(2017) Dean R. Vik et al.   PeerJ

Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean

(2017) Yosuke Nishimura et al.   mSphere

Contrasting seasonal drivers of virus abundance and production in the North Pacific Ocean

(2017) P. Jackson Gainer et al.   PLoS One

Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer

(2016) Ann C. Gregory et al.   BMC GENOMICS

Viral metabolic reprogramming in marine ecosystems

(2016) Bonnie L Hurwitz et al.   CURRENT OPINION IN MICROBIOLOGY

Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems

(2016) Karin Holmfeldt et al.   ENVIRONMENTAL MICROBIOLOGY

Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus

(2016) Cristina Howard-Varona et al.   ISME Journal

High coverage metabolomics analysis reveals phage-specific alterations to Pseudomonas aeruginosa physiology during infection

(2016) Jeroen De Smet et al.   ISME Journal

Plankton networks driving carbon export in the oligotrophic ocean

(2016) Lionel Guidi et al.   NATURE

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

(2016) Simon Roux et al.   NATURE

Uncovering Earth’s virome

(2016) David Paez-Espino et al.   NATURE

Alignment-free $d_2^*$ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences

(2016) Nathan A. Ahlgren et al.   NUCLEIC ACIDS RESEARCH

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Virocell Metabolism: Metabolic Innovations During Host–Virus Interactions in the Ocean

(2016) Shilo Rosenwasser et al.   TRENDS IN MICROBIOLOGY

Genomes of Abundant and Widespread Viruses from the Deep Ocean

(2016) Carolina Megumi Mizuno et al.   mBio

Next-Generation “-omics” Approaches Reveal a Massive Alteration of Host RNA Metabolism during Bacteriophage Infection of Pseudomonas aeruginosa

(2016) Anne Chevallereau et al.   PLoS Genetics

Re-examination of the relationship between marine virus and microbial cell abundances

(2016) Charles H. Wigington et al.   Nature Microbiology

Isolation of Polyvalent Bacteriophages by Sequential Multiple-Host Approaches

(2015) Pingfeng Yu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Variably lytic infection dynamics of largeBacteroidetespodovirus phi38:1 against twoCellulophaga balticahost strains

(2015) Vinh T. Dang et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptome dynamics of a broad host-range cyanophage and its hosts

(2015) Shany Doron et al.   ISME Journal

A new perspective on lysogeny: prophages as active regulatory switches of bacteria

(2015) Ron Feiner et al.   NATURE REVIEWS MICROBIOLOGY

Patterns and ecological drivers of ocean viral communities

(2015) J. R. Brum et al.   SCIENCE

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre

(2015) Kristina M. Fontanez et al.   Frontiers in Microbiology

Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea

(2015) Elena Lara et al.   PLoS One

Contrasting genomic patterns and infection strategies of two co-existingBacteroidetespodovirus genera

(2014) Karin Holmfeldt et al.   ENVIRONMENTAL MICROBIOLOGY

Filamentous phages prevalent in Pseudoalteromonas spp. confer properties advantageous to host survival in Arctic sea ice

(2014) Zi-Chao Yu et al.   ISME Journal

Development of Giant Bacteriophage  KZ Is Independent of the Host Transcription Apparatus

(2014) P.-J. Ceyssens et al.   JOURNAL OF VIROLOGY

Viral tagging reveals discrete populations in Synechococcus viral genome sequence space

(2014) Li Deng et al.   NATURE

The elemental composition of virus particles: implications for marine biogeochemical cycles

(2014) Luis F. Jover et al.   NATURE REVIEWS MICROBIOLOGY

Role of Filamentous Phage SW1 in Regulating the Lateral Flagella of Shewanella piezotolerans Strain WP3 at Low Temperatures

(2013) Huahua Jian et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes

(2013) Bhakti Dwivedi et al.   BMC EVOLUTIONARY BIOLOGY

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists

(2013) Cheryl-Emiliane T Chow et al.   ISME Journal

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

(2013) Pascal Hingamp et al.   ISME Journal

Phage infection of an environmentally relevant marine bacterium alters host metabolism and lysate composition

(2013) Nana Yaw D Ankrah et al.   ISME Journal

Morphology, Physiological Characteristics, and Complete Sequence of Marine Bacteriophage  RIO-1 Infecting Pseudoalteromonas marina

(2013) S. C. Hardies et al.   JOURNAL OF VIROLOGY

Expanding the Marine Virosphere Using Metagenomics

(2013) Carolina Megumi Mizuno et al.   PLoS Genetics

The virocell concept and environmental microbiology

(2012) Patrick Forterre   ISME Journal

Determining Host Metabolic Limitations on Viral Replication via Integrated Modeling and Experimental Perturbation

(2012) Elsa W. Birch et al.   PLoS Computational Biology

Just scratching the surface: an expanding view of the Cpx envelope stress response

(2011) Stefanie L. Vogt et al.   FEMS MICROBIOLOGY LETTERS

Quantification of mRNA and protein and integration with protein turnover in a bacterium

(2011) T. Maier et al.   Molecular Systems Biology

Specialization versus adaptation: two strategies employed by cyanophages to enhance their translation efficiencies

(2011) Keren Limor-Waisberg et al.   NUCLEIC ACIDS RESEARCH

Modeling Diverse Communities of Marine Microbes

(2010) Michael J. Follows et al.   Annual Review of Marine Science

Manipulation of cellular syntheses and the nature of viruses: The virocell concept

(2010) Patrick Forterre   COMPTES RENDUS CHIMIE

Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1

(2010) Melissa Beth Duhaime et al.   ISME Journal

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Analysis of the Pseudoalteromonas tunicata Genome Reveals Properties of a Surface-Associated Life Style in the Marine Environment

(2008) Torsten Thomas et al.   PLoS One

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE