A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes
出版年份 2013 全文链接
标题
A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes
作者
关键词
Ribonucleotide reductase, Phage, Metagenome, Phage metadata, Phylogenetics, Evolution, Split gene
出版物
BMC EVOLUTIONARY BIOLOGY
Volume 13, Issue 1, Pages 33
出版商
Springer Nature
发表日期
2013-02-08
DOI
10.1186/1471-2148-13-33
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The genome and proteome of a Campylobacter coli bacteriophage vB_CcoM-IBB_35 reveal unusual features
- (2012) Carla M Carvalho et al. Virology Journal
- Development ofphoHas a Novel Signature Gene for Assessing Marine Phage Diversity
- (2011) Dawn B. Goldsmith et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses
- (2011) Kyoung-Ho Kim et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Complete genomic sequence of a T4-like bacteriophage, phiAS4, infecting Aeromonas salmonicida subsp. salmonicida
- (2011) J. H. Kim et al. ARCHIVES OF VIROLOGY
- Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges
- (2011) Sijun Huang et al. ENVIRONMENTAL MICROBIOLOGY
- Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage
- (2011) Rika E. Anderson et al. FEMS MICROBIOLOGY ECOLOGY
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism
- (2011) L. R. Thompson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Exploring the viral world through metagenomics
- (2011) Karyna Rosario et al. Current Opinion in Virology
- Census of the Viral Metagenome within an Activated Sludge Microbial Assemblage
- (2010) L. C. Parsley et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metagenomic Analysis of the Viral Communities in Fermented Foods
- (2010) Eun-Jin Park et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Characterization of Lactococcus lactis Phage 949 and Comparison with Other Lactococcal Phages
- (2010) J. E. Samson et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Ribonucleotide reduction - horizontal transfer of a required function spans all three domains
- (2010) Daniel Lundin et al. BMC EVOLUTIONARY BIOLOGY
- Evidence for a lineage of virulent bacteriophages that target Campylobacter
- (2010) Andrew R Timms et al. BMC GENOMICS
- The metavirome of a hypersaline environment
- (2010) Fernando Santos et al. ENVIRONMENTAL MICROBIOLOGY
- Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments
- (2010) Matthew B. Sullivan et al. ENVIRONMENTAL MICROBIOLOGY
- Viral and microbial community dynamics in four aquatic environments
- (2010) Beltran Rodriguez-Brito et al. ISME Journal
- Brochothrix thermosphacta Bacteriophages Feature Heterogeneous and Highly Mosaic Genomes and Utilize Unique Prophage Insertion Sites
- (2010) S. Kilcher et al. JOURNAL OF BACTERIOLOGY
- Transposases are the most abundant, most ubiquitous genes in nature
- (2010) Ramy K. Aziz et al. NUCLEIC ACIDS RESEARCH
- FragGeneScan: predicting genes in short and error-prone reads
- (2010) Mina Rho et al. NUCLEIC ACIDS RESEARCH
- CDD: a Conserved Domain Database for the functional annotation of proteins
- (2010) A. Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- A Primer on Metagenomics
- (2010) John C. Wooley et al. PLoS Computational Biology
- RNRdb, a curated database of the universal enzyme family ribonucleotide reductase, reveals a high level of misannotation in sequences deposited to Genbank
- (2009) Daniel Lundin et al. BMC GENOMICS
- Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence ofSynechococcushost genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution
- (2009) Andrew D. Millard et al. ENVIRONMENTAL MICROBIOLOGY
- Metagenomic analysis of viruses in reclaimed water
- (2009) Karyna Rosario et al. ENVIRONMENTAL MICROBIOLOGY
- Genome sequences of two novel phages infecting marine roseobacters
- (2009) Yanlin Zhao et al. ENVIRONMENTAL MICROBIOLOGY
- The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial ‘mobilome’
- (2009) Matthew B. Sullivan et al. ENVIRONMENTAL MICROBIOLOGY
- Scientific Serendipity Initiates an Intron Odyssey
- (2009) Marlene Belfort JOURNAL OF BIOLOGICAL CHEMISTRY
- Fractured genes: a novel genomic arrangement involving new split inteins and a new homing endonuclease family
- (2009) Bareket Dassa et al. NUCLEIC ACIDS RESEARCH
- High Diversity of the Viral Community from an Antarctic Lake
- (2009) A. Lopez-Bueno et al. SCIENCE
- Functional viral metagenomics and the next generation of molecular tools
- (2009) Thomas Schoenfeld et al. TRENDS IN MICROBIOLOGY
- Phylogenetic Diversity of Sequences of Cyanophage Photosynthetic Gene psbA in Marine and Freshwaters
- (2008) C. Chenard et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Amplification of Uncultured Single-Stranded DNA Viruses from Rice Paddy Soil
- (2008) K.-H. Kim et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Viral communities associated with healthy and bleaching corals
- (2008) Kristen L. Marhaver et al. ENVIRONMENTAL MICROBIOLOGY
- Lysogenic virus–host interactions predominate at deep-sea diffuse-flow hydrothermal vents
- (2008) Shannon J Williamson et al. ISME Journal
- The Terminally Redundant, Nonpermuted Genome of Listeria Bacteriophage A511: a Model for the SPO1-Like Myoviruses of Gram-Positive Bacteria
- (2008) J. Klumpp et al. JOURNAL OF BACTERIOLOGY
- Biodiversity and biogeography of phages in modern stromatolites and thrombolites
- (2008) Christelle Desnues et al. NATURE
- Next-generation DNA sequencing
- (2008) Jay Shendure et al. NATURE BIOTECHNOLOGY
- Metagenomic Analysis of Lysogeny in Tampa Bay: Implications for Prophage Gene Expression
- (2008) Lauren McDaniel et al. PLoS One
- Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities
- (2008) Jack A. Gilbert et al. PLoS One
- Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa
- (2008) R. L. Vega Thurber et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome sequence of the lytic bacteriophage P1201 from Corynebacterium glutamicum NCHU 87078: Evolutionary relationships to phages from Corynebacterineae
- (2008) Chang-Lin Chen et al. VIROLOGY
- A bacterial metapopulation adapts locally to phage predation despite global dispersal
- (2007) V. Kunin et al. GENOME RESEARCH
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now