Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea

Contrasting genomic patterns and infection strategies of two co-existingBacteroidetespodovirus genera

(2014) Karin Holmfeldt et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of environmental single-stranded DNA phages revealed by PCR amplification of the partial major capsid protein

(2014) Max Hopkins et al.   ISME Journal

Viral tagging reveals discrete populations in Synechococcus viral genome sequence space

(2014) Li Deng et al.   NATURE

Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses

(2014) B. L. Hurwitz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

(2014) Simon Roux et al.   eLife

Sequencing platform and library preparation choices impact viral metagenomes

(2013) Sergei A Solonenko et al.   BMC GENOMICS

Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses

(2013) Elke Allers et al.   ENVIRONMENTAL MICROBIOLOGY

Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses

(2013) Jennifer R Brum et al.   ISME Journal

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

(2013) Pascal Hingamp et al.   ISME Journal

Previously unknown and highly divergent ssDNA viruses populate the oceans

(2013) Jessica M Labonté et al.   ISME Journal

Morphology, Physiological Characteristics, and Complete Sequence of Marine Bacteriophage  RIO-1 Infecting Pseudoalteromonas marina

(2013) S. C. Hardies et al.   JOURNAL OF VIROLOGY

Abundant SAR11 viruses in the ocean

(2013) Yanlin Zhao et al.   NATURE

The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology

(2013) Bonnie L. Hurwitz et al.   PLoS One

Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans

(2013) I. Kang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Twelve previously unknown phage genera are ubiquitous in global oceans

(2013) K. Holmfeldt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The global virome: not as big as we thought?

(2013) J Cesar Ignacio-Espinoza et al.   Current Opinion in Virology

Metabolic reprogramming by viruses in the sunlit and dark ocean

(2013) Bonnie L Hurwitz et al.   GENOME BIOLOGY

Taxonomic composition of the particle-attached and free-living bacterial assemblages in the Northwest Mediterranean Sea analyzed by pyrosequencing of the 16S rRNA

(2013) Bibiana G. Crespo et al.   MicrobiologyOpen

Phylogenomics of T4 cyanophages: lateral gene transfer in the ‘core’ and origins of host genes

(2012) J. Cesar Ignacio-Espinoza et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic and functional analysis of Vibrio phage SIO-2 reveals novel insights into ecology and evolution of marine siphoviruses

(2012) A.-C. Baudoux et al.   ENVIRONMENTAL MICROBIOLOGY

Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

(2012) Bonnie L. Hurwitz et al.   ENVIRONMENTAL MICROBIOLOGY

Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method

(2012) Melissa B. Duhaime et al.   ENVIRONMENTAL MICROBIOLOGY

Are we missing half of the viruses in the ocean?

(2012) Grieg F Steward et al.   ISME Journal

Genome Sequences of Type Strains of Seven Species of the Marine Bacterium Pseudoalteromonas

(2012) B.-B. Xie et al.   JOURNAL OF BACTERIOLOGY

Complete Genome Sequence of Temperate Bacteriophage AcaML1 from the Extreme Acidophile Acidithiobacillus caldus ATCC 51756

(2012) P. Tapia et al.   JOURNAL OF VIROLOGY

Complete Genome Sequence of Klebsiella pneumoniae Phage JD001

(2012) Z. Cui et al.   JOURNAL OF VIROLOGY

Expression and Functional Characterization of the First Bacteriophage-Encoded Chaperonin

(2012) Lidia P. Kurochkina et al.   JOURNAL OF VIROLOGY

Annual variability in light modulation of bacterial heterotrophic activity in surface northwestern Mediterranean waters

(2012) Clara Ruiz-González et al.   LIMNOLOGY AND OCEANOGRAPHY

Phage Morphology Recapitulates Phylogeny: The Comparative Genomics of a New Group of Myoviruses

(2012) André M. Comeau et al.   PLoS One

Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease

(2012) Alison R. Erickson et al.   PLoS One

Phage–bacteria infection networks

(2012) Joshua S. Weitz et al.   TRENDS IN MICROBIOLOGY

Ocean viruses: Rigorously evaluating the metagenomic sample-to-sequence pipeline

(2012) Melissa B. Duhaime et al.   VIROLOGY

Marine Viruses: Truth or Dare

(2011) Mya Breitbart   Annual Review of Marine Science

Characterization of a T5-Like Coliphage, SPC35, and Differential Development of Resistance to SPC35 inSalmonella entericaSerovar Typhimurium andEscherichia coli

(2011) Minsik Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of Growth Rates of Aerobic Anoxygenic Phototrophic Bacteria and Other Bacterioplankton Groups in Coastal Mediterranean Waters

(2011) Isabel Ferrera et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges

(2011) Sijun Huang et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative metagenomics of microbial traits within oceanic viral communities

(2011) Itai Sharon et al.   ISME Journal

Comparative genomic analysis of bacteriophage EP23 infecting Shigella sonnei and Escherichia coli

(2011) Ho-Won Chang et al.   JOURNAL OF MICROBIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

To Lyse or Not to Lyse: Transient-Mediated Stochastic Fate Determination in Cells Infected by Bacteriophages

(2011) Richard I. Joh et al.   PLoS Computational Biology

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

(2010) Matthew B. Sullivan et al.   ENVIRONMENTAL MICROBIOLOGY

Viral and microbial community dynamics in four aquatic environments

(2010) Beltran Rodriguez-Brito et al.   ISME Journal

Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1

(2010) Melissa Beth Duhaime et al.   ISME Journal

Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes

(2010) Matthew R. Henn et al.   PLoS One

A simple and efficient method for concentration of ocean viruses by chemical flocculation

(2010) Seth G. John et al.   Environmental Microbiology Reports

Characterization of a New Plasmid-Like Prophage in a Pandemic Vibrio parahaemolyticus O3:K6 Strain

(2009) S.-F. Lan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic analysis of multiple Roseophage SIO1 strains

(2009) Florent Angly et al.   ENVIRONMENTAL MICROBIOLOGY

Annual changes of bacterial mortality due to viruses and protists in an oligotrophic coastal environment (NW Mediterranean)

(2009) Julia A. Boras et al.   ENVIRONMENTAL MICROBIOLOGY

The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial ‘mobilome’

(2009) Matthew B. Sullivan et al.   ENVIRONMENTAL MICROBIOLOGY

Combination of FASP and StageTip-Based Fractionation Allows In-Depth Analysis of the Hippocampal Membrane Proteome

(2009) Jacek R. Wiśniewski et al.   JOURNAL OF PROTEOME RESEARCH

Viruses manipulate the marine environment

(2009) Forest Rohwer et al.   NATURE

The Bacteriophage DNA Packaging Motor

(2008) Venigalla B. Rao et al.   Annual Review of Genetics

Isolation of New Stenotrophomonas Bacteriophages and Genomic Characterization of Temperate Phage S1

(2008) P. Garcia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Randomly Amplified Polymorphic DNA PCR as a Tool for Assessment of Marine Viral Richness

(2008) D. M. Winget et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Shotgun metaproteomics of the human distal gut microbiota

(2008) Nathan C Verberkmoes et al.   ISME Journal

Global-scale processes with a nanoscale drive: the role of marine viruses

(2008) Corina P D Brussaard et al.   ISME Journal

Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?

(2008) John H Paul   ISME Journal

The Temperate Marine Phage  HAP-1 of Halomonas aquamarina Possesses a Linear Plasmid-Like Prophage Genome

(2008) J. M. Mobberley et al.   JOURNAL OF VIROLOGY

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE

The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

(2008) Shannon J. Williamson et al.   PLoS One

Analysis of the Pseudoalteromonas tunicata Genome Reveals Properties of a Surface-Associated Life Style in the Marine Environment

(2008) Torsten Thomas et al.   PLoS One

Determination of cell fate selection during phage lambda infection

(2008) F. St-Pierre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA