Diel cycling and long-term persistence of viruses in the ocean’s euphotic zone

Genetic hurdles limit the arms race between Prochlorococcus and the T7-like podoviruses infecting them

(2017) Daniel A Schwartz et al.   ISME Journal

Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera

(2017) Samuel T. Wilson et al.   Nature Microbiology

Environmental drivers of a microbial genomic transition zone in the ocean’s interior

(2017) Daniel R. Mende et al.   Nature Microbiology

Genomic diversification of marine cyanophages into stable ecotypes

(2016) Marcia F. Marston et al.   ENVIRONMENTAL MICROBIOLOGY

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

(2016) Simon Roux et al.   NATURE

Uncovering Earth’s virome

(2016) David Paez-Espino et al.   NATURE

Genomes of Abundant and Widespread Viruses from the Deep Ocean

(2016) Carolina Megumi Mizuno et al.   mBio

Quantitative Transcriptomics Reveals the Growth- and Nutrient-Dependent Response of a Streamlined Marine Methylotroph to Methanol and Naturally Occurring Dissolved Organic Matter

(2016) Scott M. Gifford et al.   mBio

Viruses as Winners in the Game of Life

(2016) Ana Georgina Cobián Güemes et al.   Annual Review of Virology

Transcriptome dynamics of a broad host-range cyanophage and its hosts

(2015) Shany Doron et al.   ISME Journal

Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre

(2015) Jessica A Bryant et al.   ISME Journal

Light-driven synchrony ofProchlorococcusgrowth and mortality in the subtropical Pacific gyre

(2015) Francois Ribalet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community transcriptional networks are conserved in three domains at ocean basin scales

(2015) Frank O. Aylward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Patterns and ecological drivers of ocean viral communities

(2015) J. R. Brum et al.   SCIENCE

Deep sequencing of the viralphoHgene reveals temporal variation, depth-specific composition, and persistent dominance of the same viralphoHgenes in the Sargasso Sea

(2015) Dawn B. Goldsmith et al.   PeerJ

VirSorter: mining viral signal from microbial genomic data

(2015) Simon Roux et al.   PeerJ

Detecting Rhythms in Time Series with RAIN

(2014) Paul F. Thaben et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Recent advances in genomic DNA sequencing of microbial species from single cells

(2014) Roger S. Lasken et al.   NATURE REVIEWS GENETICS

Microbial oceanography and the Hawaii Ocean Time-series programme

(2014) David M. Karl et al.   NATURE REVIEWS MICROBIOLOGY

Modeling ecological drivers in marine viral communities using comparative metagenomics and network analyses

(2014) B. L. Hurwitz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages

(2014) E. A. Ottesen et al.   SCIENCE

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

(2014) N. Kashtan et al.   SCIENCE

Strong Seasonality and Interannual Recurrence in Marine Myovirus Communities

(2013) A. Pagarete et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists

(2013) Cheryl-Emiliane T Chow et al.   ISME Journal

The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology

(2013) Bonnie L. Hurwitz et al.   PLoS One

Genomes from Metagenomics

(2013) I. Sharon et al.   SCIENCE

Expanding the Marine Virosphere Using Metagenomics

(2013) Carolina Megumi Mizuno et al.   PLoS Genetics

Viral lysis and nanoflagellate grazing as factors controlling diel variations of Synechococcus spp. summer abundance in coastal waters of Taiwan

(2012) AY Tsai et al.   AQUATIC MICROBIAL ECOLOGY

Marine Viruses: Truth or Dare

(2011) Mya Breitbart   Annual Review of Marine Science

Abundance and Distribution of Synechococcus spp. and Cyanophages in the Chesapeake Bay

(2011) Kui Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism

(2011) L. R. Thompson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Light-dependent adsorption of photosynthetic cyanophages to Synechococcus  sp. WH7803

(2010) Ying Jia et al.   FEMS MICROBIOLOGY LETTERS

Viral and microbial community dynamics in four aquatic environments

(2010) Beltran Rodriguez-Brito et al.   ISME Journal

Morphological Characterization of Viruses in the Stratified Water Column of Alkaline, Hypersaline Mono Lake

(2010) Jennifer R. Brum et al.   MICROBIAL ECOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Diel and daily fluctuations in virioplankton production in coastal ecosystems

(2009) Danielle M. Winget et al.   ENVIRONMENTAL MICROBIOLOGY

Viruses manipulate the marine environment

(2009) Forest Rohwer et al.   NATURE

Ocean's least productive waters are expanding

(2008) Jeffrey J. Polovina et al.   GEOPHYSICAL RESEARCH LETTERS