A time-resolved multi-omic atlas of the developing mouse liver

Proteomics identifies new therapeutic targets of early-stage hepatocellular carcinoma

(2019) Ying Jiang et al.   NATURE

ChEA3: transcription factor enrichment analysis by orthogonal omics integration

(2019) Alexandra B Keenan et al.   NUCLEIC ACIDS RESEARCH

Wnt/β-Catenin Signaling in Liver Development, Homeostasis, and Pathobiology

(2018) Jacquelyn O. Russell et al.   Annual Review of Pathology-Mechanisms of Disease

AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors

(2018) Hui Hu et al.   NUCLEIC ACIDS RESEARCH

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Hippo Signaling in the Liver Regulates Organ Size, Cell Fate, and Carcinogenesis

(2017) Sachin H. Patel et al.   GASTROENTEROLOGY

The developmental proteome of Drosophila melanogaster

(2017) Nuria Casas-Vila et al.   GENOME RESEARCH

Bone morphogenetic protein signaling governs biliary-driven liver regeneration in zebrafish through tbx2b and id2a

(2017) Tae-Young Choi et al.   HEPATOLOGY

An Anatomically Resolved Mouse Brain Proteome Reveals Parkinson Disease-relevant Pathways

(2017) Sung Yun Jung et al.   MOLECULAR & CELLULAR PROTEOMICS

Firmiana: towards a one-stop proteomic cloud platform for data processing and analysis

(2017) Jinwen Feng et al.   NATURE BIOTECHNOLOGY

Protein Expression Landscape of Mouse Embryos during Pre-implantation Development

(2017) Yawei Gao et al.   Cell Reports

O-GlcNAcylation of Orphan Nuclear Receptor Estrogen-Related Receptor γ Promotes Hepatic Gluconeogenesis

(2016) Jagannath Misra et al.   DIABETES

Echoes of the embryo: using the developmental biology toolkit to study cancer

(2016) Nicole M. Aiello et al.   Disease Models & Mechanisms

Regulation of liver development: implications for liver biology across the lifespan

(2016) Philip A Gruppuso et al.   JOURNAL OF MOLECULAR ENDOCRINOLOGY

Defining the consequences of genetic variation on a proteome-wide scale

(2016) Joel M. Chick et al.   NATURE

Systems proteomics of liver mitochondria function

(2016) E. G. Williams et al.   SCIENCE

LATS-YAP/TAZ controls lineage specification by regulating TGFβ signaling and Hnf4α expression during liver development

(2016) Da-Hye Lee et al.   Nature Communications

Signalling pathways involved in the process of mesenchymal stem cells differentiating into hepatocytes

(2015) Jun-Song Ye et al.   CELL PROLIFERATION

Orchestrating liver development

(2015) M. Gordillo et al.   DEVELOPMENT

β-Catenin Signaling and Roles in Liver Homeostasis, Injury, and Tumorigenesis

(2015) Satdarshan Pal Monga   GASTROENTEROLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Integration of Hippo signalling and the unfolded protein response to restrain liver overgrowth and tumorigenesis

(2015) Hongtan Wu et al.   Nature Communications

Deciphering the Developmental Dynamics of the Mouse Liver Transcriptome

(2015) Sumedha S. Gunewardena et al.   PLoS One

CellNet: Network Biology Applied to Stem Cell Engineering

(2014) Patrick Cahan et al.   CELL

Hippo Pathway Activity Influences Liver Cell Fate

(2014) Dean Yimlamai et al.   CELL

Cell-Type-Resolved Quantitative Proteomics of Murine Liver

(2014) S. Babak Azimifar et al.   Cell Metabolism

Emerging roles of Notch signaling in liver disease

(2014) Fabian Geisler et al.   HEPATOLOGY

Beta-catenin signaling in murine liver zonation and regeneration: A Wnt-Wnt situation!

(2014) Jing Yang et al.   HEPATOLOGY

Impact of regulatory variation from RNA to protein

(2014) A. Battle et al.   SCIENCE

Notch signaling and new therapeutic options in liver disease

(2013) Carola Maria Morell et al.   JOURNAL OF HEPATOLOGY

A Fast Workflow for Identification and Quantification of Proteomes

(2013) Chen Ding et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteome-wide profiling of activated transcription factors with a concatenated tandem array of transcription factor response elements

(2013) C. Ding et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Notch signalling beyond liver development: Emerging concepts in liver repair and oncogenesis

(2013) Carola Maria Morell et al.   Clinics and Research in Hepatology and Gastroenterology

RNA-Seq Reveals Different mRNA Abundance of Transporters and Their Alternative Transcript Isoforms During Liver Development

(2012) Julia Yue Cui et al.   TOXICOLOGICAL SCIENCES

Transcriptional Networks in Liver and Intestinal Development

(2012) K. L. Sheaffer et al.   Cold Spring Harbor Perspectives in Biology

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Organogenesis and Development of the Liver

(2010) Karim Si-Tayeb et al.   DEVELOPMENTAL CELL

Characterization of two F4/80-positive Kupffer cell subsets by their function and phenotype in mice

(2010) Manabu Kinoshita et al.   JOURNAL OF HEPATOLOGY

The Toll-like receptor 4 ligands Mrp8 and Mrp14 are crucial in the development of autoreactive CD8+ T cells

(2010) Karin Loser et al.   NATURE MEDICINE

Wnt/β-catenin signaling in hepatic organogenesis

(2010) Kari Nejak-Bowen et al.   Organogenesis

Notch signaling controls liver development by regulating biliary differentiation

(2009) Y. Zong et al.   DEVELOPMENT

TGF-β Superfamily Signaling in Embryonic Development and Homeostasis

(2009) Mary Y. Wu et al.   DEVELOPMENTAL CELL

Translational regulation mechanisms of AP-1 proteins

(2009) Paul Willi Vesely et al.   MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols