The developmental proteome of Drosophila melanogaster

On the Dependency of Cellular Protein Levels on mRNA Abundance

(2016) Yansheng Liu et al.   CELL

Analysis ofDrosophila melanogasterproteome dynamics during embryonic development by a combination of label-free proteomics approaches

(2016) Bertrand Fabre et al.   PROTEOMICS

Quantitative Proteomics Uncovers Novel Factors Involved in Developmental Differentiation of Trypanosoma brucei

(2016) Mario Dejung et al.   PLoS Pathogens

On the Relationship of Protein and mRNA Dynamics in Vertebrate Embryonic Development

(2015) Leonid Peshkin et al.   DEVELOPMENTAL CELL

Gene Model Annotations for Drosophila melanogaster : Impact of High-Throughput Data

(2015) Beverley B. Matthews et al.   G3-Genes Genomes Genetics

Systematic imaging reveals features and changing localization of mRNAs in Drosophila development

(2015) Helena Jambor et al.   eLife

A library of MiMICs allows tagging of genes and reversible, spatial and temporal knockdown of proteins in Drosophila

(2015) Sonal Nagarkar-Jaiswal et al.   eLife

The small protein floodgates are opening; now the functional analysis begins

(2014) Kumaran S Ramamurthi et al.   BMC BIOLOGY

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Diversity and dynamics of the Drosophila transcriptome

(2014) James B. Brown et al.   NATURE

Quantitative proteomics reveals the dynamics of protein changes duringDrosophilaoocyte maturation and the oocyte-to-embryo transition

(2014) Iva Kronja et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conservation of mRNA and Protein Expression during Development of C. elegans

(2014) Dominic Grün et al.   Cell Reports

Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq

(2014) Julie L Aspden et al.   eLife

PIWI proteins are essential for early Drosophila embryogenesis

(2013) Sneha Ramesh Mani et al.   DEVELOPMENTAL BIOLOGY

Qualitative and quantitative analysis of the adultDrosophila melanogasterproteome

(2013) Xiaohua Xing et al.   PROTEOMICS

Conserved Regulation of Cardiac Calcium Uptake by Peptides Encoded in Small Open Reading Frames

(2013) E. G. Magny et al.   SCIENCE

Ecdysone Control of Developmental Transitions: Lessons from Drosophila Research

(2012) Naoki Yamanaka et al.   Annual Review of Entomology

The Price of Tags in Protein Localization Studies

(2012) William Margolin   JOURNAL OF BACTERIOLOGY

Comparative Proteomics of Two Life Cycle Stages of Stable Isotope-labeledTrypanosoma bruceiReveals Novel Components of the Parasite's Host Adaptation Machinery

(2012) Falk Butter et al.   MOLECULAR & CELLULAR PROTEOMICS

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

(2012) Christine Vogel et al.   NATURE REVIEWS GENETICS

Genome-wide examination of the transcriptional response to ecdysteroids 20-hydroxyecdysone and ponasterone A in Drosophila melanogaster

(2011) Sarah E Gonsalves et al.   BMC GENOMICS

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Hundreds of putatively functional small open reading frames in Drosophila

(2011) Emmanuel Ladoukakis et al.   GENOME BIOLOGY

Maternal impairment of transposon regulation in Drosophila melanogaster by mutations in the genes aubergine, piwi and Suppressor of variegation 205

(2010) MICHAEL J. SIMMONS et al.   Genetics Research

The Drosophila melanogaster sperm proteome-II (DmSP-II)

(2010) Elizabeth R. Wasbrough et al.   Journal of Proteomics

The SILAC Fly Allows for Accurate Protein Quantificationin Vivo

(2010) Matthias D. Sury et al.   MOLECULAR & CELLULAR PROTEOMICS

Gene expression divergence recapitulates the developmental hourglass model

(2010) Alex T. Kalinka et al.   NATURE

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

(2010) Peter V. Kharchenko et al.   NATURE

The developmental transcriptome of Drosophila melanogaster

(2010) Brenton R. Graveley et al.   NATURE

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

(2010) et al.   SCIENCE

Delayed Correlation of mRNA and Protein Expression in Rapamycin-treated Cells and a Role for Ggc1 in Cellular Sensitivity to Rapamycin

(2009) Marjorie L. Fournier et al.   MOLECULAR & CELLULAR PROTEOMICS

Proteome mapping of the Drosophila melanogaster male reproductive system

(2009) Nobuaki Takemori et al.   PROTEOMICS

Post-mating Gene Expression Profiles of Female Drosophila melanogaster in Response to Time and to Four Male Accessory Gland Proteins

(2008) L. A. McGraw et al.   GENETICS

Combined Use of RNAi and Quantitative Proteomics to Study Gene Function in Drosophila

(2008) Tiziana Bonaldi et al.   MOLECULAR CELL

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

The AID/APOBEC family of nucleic acid mutators

(2008) Silvestro G Conticello   GENOME BIOLOGY