标题
EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes
作者
关键词
-
出版物
BRIEFINGS IN BIOINFORMATICS
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2019-12-10
DOI
10.1093/bib/bbz169
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Mechanisms of PTEN loss in cancer: It’s all about diversity
- (2019) Virginia Álvarez-Garcia et al. SEMINARS IN CANCER BIOLOGY
- The International Cancer Genome Consortium Data Portal
- (2019) Junjun Zhang et al. NATURE BIOTECHNOLOGY
- The Cancer Genome Atlas: Creating Lasting Value beyond Its Data
- (2018) Carolyn Hutter et al. CELL
- Targeting the PI3K pathway in cancer: are we making headway?
- (2018) Filip Janku et al. Nature Reviews Clinical Oncology
- IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding
- (2018) Bálint Mészáros et al. NUCLEIC ACIDS RESEARCH
- In vivo brain GPCR signaling elucidated by phosphoproteomics
- (2018) Jeffrey J. Liu et al. SCIENCE
- PTMD: A Database of Human Disease-associated Post-translational Modifications
- (2018) Haodong Xu et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- UniProt: a worldwide hub of protein knowledge
- (2018) NUCLEIC ACIDS RESEARCH
- IID 2018 update: context-specific physical protein–protein interactions in human, model organisms and domesticated species
- (2018) Max Kotlyar et al. NUCLEIC ACIDS RESEARCH
- dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications
- (2018) Kai-Yao Huang et al. NUCLEIC ACIDS RESEARCH
- STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
- (2018) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- The BioGRID interaction database: 2019 update
- (2018) Rose Oughtred et al. NUCLEIC ACIDS RESEARCH
- RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
- (2018) Stephen K Burley et al. NUCLEIC ACIDS RESEARCH
- COSMIC: the Catalogue Of Somatic Mutations In Cancer
- (2018) John G Tate et al. NUCLEIC ACIDS RESEARCH
- FPD: A comprehensive phosphorylation database in fungi
- (2017) Youhuang Bai et al. Fungal Biology
- TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
- (2017) Heonjong Han et al. NUCLEIC ACIDS RESEARCH
- iPTMnet: an integrated resource for protein post-translational modification network discovery
- (2017) Hongzhan Huang et al. NUCLEIC ACIDS RESEARCH
- BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery
- (2017) Hayley M Dingerdissen et al. NUCLEIC ACIDS RESEARCH
- Network Analysis Reveals A Signaling Regulatory Loop in the PIK3CA -mutated Breast Cancer Predicting Survival Outcome
- (2017) Shauna R. McGee et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer
- (2016) Justin M. Drake et al. CELL
- Spotlight on Volasertib: Preclinical and Clinical Evaluation of a Promising Plk1 Inhibitor
- (2016) J. Van den Bossche et al. MEDICINAL RESEARCH REVIEWS
- A scored human protein–protein interaction network to catalyze genomic interpretation
- (2016) Taibo Li et al. NATURE METHODS
- Evolution of protein phosphorylation across 18 fungal species
- (2016) R. A. Studer et al. SCIENCE
- dbPAF: an integrative database of protein phosphorylation in animals and fungi
- (2016) Shahid Ullah et al. Scientific Reports
- High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics
- (2015) Sean J Humphrey et al. NATURE BIOTECHNOLOGY
- MIMP: predicting the impact of mutations on kinase-substrate phosphorylation
- (2015) Omar Wagih et al. NATURE METHODS
- Protein Phosphorylation: A Major Switch Mechanism for Metabolic Regulation
- (2015) Sean J. Humphrey et al. TRENDS IN ENDOCRINOLOGY AND METABOLISM
- Reconfiguring phosphorylation signaling by genetic polymorphisms affects cancer susceptibility
- (2015) Yongbo Wang et al. Journal of Molecular Cell Biology
- LymPHOS 2.0: an update of a phosphosite database of primary human T cells
- (2015) Tien Dung Nguyen et al. Database-The Journal of Biological Databases and Curation
- PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events
- (2014) Ralph Patrick et al. BIOINFORMATICS
- 3Dmol.js: molecular visualization with WebGL
- (2014) N. Rego et al. BIOINFORMATICS
- The human DEPhOsphorylation database DEPOD: a 2015 update
- (2014) Guangyou Duan et al. NUCLEIC ACIDS RESEARCH
- PhosphoSitePlus, 2014: mutations, PTMs and recalibrations
- (2014) Peter V. Hornbeck et al. NUCLEIC ACIDS RESEARCH
- SysPTM 2.0: an updated systematic resource for post-translational modification
- (2014) J. Li et al. Database-The Journal of Biological Databases and Curation
- dbPPT: a comprehensive database of protein phosphorylation in plants
- (2014) Han Cheng et al. Database-The Journal of Biological Databases and Curation
- PSEA: Kinase-specific prediction and analysis of human phosphorylation substrates
- (2014) Sheng-Bao Suo et al. Scientific Reports
- PhosphoNetworks: a database for human phosphorylation networks
- (2013) J. Hu et al. BIOINFORMATICS
- PKIS: computational identification of protein kinases for experimentally discovered protein phosphorylation sites
- (2013) Liang Zou et al. BMC BIOINFORMATICS
- Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2
- (2013) Sean J. Humphrey et al. Cell Metabolism
- mentha: a resource for browsing integrated protein-interaction networks
- (2013) Alberto Calderone et al. NATURE METHODS
- P3DB 3.0: From plant phosphorylation sites to protein networks
- (2013) Qiuming Yao et al. NUCLEIC ACIDS RESEARCH
- Cancer systems biology in the genome sequencing era: Part 1, dissecting and modeling of tumor clones and their networks
- (2013) Edwin Wang et al. SEMINARS IN CANCER BIOLOGY
- Cancer systems biology in the genome sequencing era: Part 2, evolutionary dynamics of tumor clonal networks and drug resistance
- (2013) Edwin Wang et al. SEMINARS IN CANCER BIOLOGY
- Signaling Network Assessment of Mutations and Copy Number Variations Predict Breast Cancer Subtype-Specific Drug Targets
- (2013) Naif Zaman et al. Cell Reports
- HINT: High-quality protein interactomes and their applications in understanding human disease
- (2012) Jishnu Das et al. BMC Systems Biology
- Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes
- (2012) Z. Liu et al. BRIEFINGS IN BIOINFORMATICS
- Systematic Functional Prioritization of Protein Posttranslational Modifications
- (2012) Pedro Beltrao et al. CELL
- HuPho: the human phosphatase portal
- (2012) Susanna Liberti et al. FEBS Journal
- Systematic Analysis of Protein Phosphorylation Networks From Phosphoproteomic Data
- (2012) Chunxia Song et al. MOLECULAR & CELLULAR PROTEOMICS
- The Chromosomal Passenger Complex Activates Polo Kinase at Centromeres
- (2012) Mar Carmena et al. PLOS BIOLOGY
- Medicago PhosphoProtein Database: a repository for Medicago truncatula phosphoprotein data
- (2012) Christopher M. Rose et al. Frontiers in Plant Science
- The human phosphotyrosine signaling network: Evolution and hotspots of hijacking in cancer
- (2011) L. Li et al. GENOME RESEARCH
- PINA v2.0: mining interactome modules
- (2011) Mark J. Cowley et al. NUCLEIC ACIDS RESEARCH
- Prediction of 492 human protein kinase substrate specificities
- (2011) Javad Safaei et al. Proteome Science
- PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship
- (2010) Inkyung Jung et al. BMC BIOINFORMATICS
- Phospho.ELM: a database of phosphorylation sites--update 2011
- (2010) H. Dinkel et al. NUCLEIC ACIDS RESEARCH
- PHOSIDA 2011: the posttranslational modification database
- (2010) F. Gnad et al. NUCLEIC ACIDS RESEARCH
- RegPhos: a system to explore the protein kinase–substrate phosphorylation network in humans
- (2010) Tzong-Yi Lee et al. NUCLEIC ACIDS RESEARCH
- Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites
- (2010) A. Zanzoni et al. NUCLEIC ACIDS RESEARCH
- GPS 2.1: enhanced prediction of kinase-specific phosphorylation sites with an algorithm of motif length selection
- (2010) Y. Xue et al. PROTEIN ENGINEERING DESIGN & SELECTION
- PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae
- (2010) C. Stark et al. Database-The Journal of Biological Databases and Curation
- SysPTM: A Systematic Resource for Proteomic Research on Post-translational Modifications
- (2009) Hong Li et al. MOLECULAR & CELLULAR PROTEOMICS
- PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update
- (2009) Pawel Durek et al. NUCLEIC ACIDS RESEARCH
- Large-Scale Phosphoprotein Analysis in Medicago truncatula Roots Provides Insight into in Vivo Kinase Activity in Legumes
- (2009) P. A. Grimsrud et al. PLANT PHYSIOLOGY
- LymPHOS: Design of a phosphosite database of primary human T cells
- (2009) David Ovelleiro et al. PROTEOMICS
- Weak functional constraints on phosphoproteomes
- (2009) Christian R. Landry et al. TRENDS IN GENETICS
- PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database
- (2008) Chia-Ying Yang et al. BIOINFORMATICS
- iRefIndex: A consolidated protein interaction database with provenance
- (2008) Sabry Razick et al. BMC BIOINFORMATICS
- GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy
- (2008) Yu Xue et al. MOLECULAR & CELLULAR PROTEOMICS
- Human Protein Reference Database--2009 update
- (2008) T. S. Keshava Prasad et al. NUCLEIC ACIDS RESEARCH
- P3DB: a plant protein phosphorylation database
- (2008) J. Gao et al. NUCLEIC ACIDS RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started