P3DB 3.0: From plant phosphorylation sites to protein networks

Evolutionary dynamics of protein domain architecture in plants

(2012) Xue-Cheng Zhang et al.   BMC EVOLUTIONARY BIOLOGY

A Versatile Mass Spectrometry-Based Method to Both Identify Kinase Client-Relationships and Characterize Signaling Network Topology

(2012) Nagib Ahsan et al.   JOURNAL OF PROTEOME RESEARCH

Interactome3D: adding structural details to protein networks

(2012) Roberto Mosca et al.   NATURE METHODS

PhosPhAt goes kinases—searchable protein kinase target information in the plant phosphorylation site database PhosPhAt

(2012) Monika Zulawski et al.   NUCLEIC ACIDS RESEARCH

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

Gene Ontology Annotations and Resources

(2012)   NUCLEIC ACIDS RESEARCH

Constitutively Active Mitogen-Activated Protein Kinase Versions Reveal Functions ofArabidopsisMPK4 in Pathogen Defense Signaling

(2012) Souha Berriri et al.   PLANT CELL

P3DB: An Integrated Database for Plant Protein Phosphorylation

(2012) Qiuming Yao et al.   Frontiers in Plant Science

Predicting and Analyzing Protein Phosphorylation Sites in Plants Using Musite

(2012) Qiuming Yao et al.   Frontiers in Plant Science

Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis

(2011) Renu Goel et al.   Molecular BioSystems

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

MINT, the molecular interaction database: 2012 update

(2011) Luana Licata et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

(2011) P. V. Hornbeck et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

AtMPK4 is required for male-specific meiotic cytokinesis in Arabidopsis

(2011) Qingning Zeng et al.   PLANT JOURNAL

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Phospho.ELM: a database of phosphorylation sites--update 2011

(2010) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

The RCSB Protein Data Bank: redesigned web site and web services

(2010) P. W. Rose et al.   NUCLEIC ACIDS RESEARCH

MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data

(2010) H. J. Joshi et al.   PLANT PHYSIOLOGY

MEKK1, MKK1/MKK2 and MPK4 function together in a mitogen-activated protein kinase cascade to regulate innate immunity in plants

(2008) Minghui Gao et al.   CELL RESEARCH

Combining Protein-Based IMAC, Peptide-Based IMAC, and MudPIT for Efficient Phosphoproteomic Analysis

(2008) Greg T. Cantin et al.   JOURNAL OF PROTEOME RESEARCH

Phosphoproteomics: Unraveling the Signaling Web

(2008) Paul H. Huang et al.   MOLECULAR CELL

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

P3DB: a plant protein phosphorylation database

(2008) J. Gao et al.   NUCLEIC ACIDS RESEARCH