Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease
出版年份 2016 全文链接
标题
Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease
作者
关键词
<em class=EmphasisTypeItalic >Clostridium difficile</em>, Toxin-negative isolates, Comparative genomics, CDI, Zoonosis
出版物
BMC MICROBIOLOGY
Volume 16, Issue 1, Pages -
出版商
Springer Nature
发表日期
2016-03-12
DOI
10.1186/s12866-016-0653-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Potential Sources of Clostridium difficile in Human Infection
- (2015) Martijn P. Bauer et al. INFECTIOUS DISEASE CLINICS OF NORTH AMERICA
- Burden of Clostridium difficile Infection in the United States
- (2015) Fernanda C. Lessa et al. NEW ENGLAND JOURNAL OF MEDICINE
- Molecular methods for detecting and typing of Clostridium difficile
- (2015) Deirdre A. Collins et al. PATHOLOGY
- Clostridium difficile: New Insights into the Evolution of the Pathogenicity Locus
- (2015) Marc Monot et al. Scientific Reports
- Characterization of Temperate Phages Infecting Clostridium difficile Isolates of Human and Animal Origins
- (2014) Ognjen Sekulovic et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism
- (2014) Laura J Pettit et al. BMC GENOMICS
- Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads
- (2014) Frederic Bertels et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Flagellin FliC of Clostridium difficile Is Responsible for Pleiotropic Gene Regulation during In Vivo Infection
- (2014) Amira Barketi-Klai et al. PLoS One
- The genome of Clostridium difficile 5.3
- (2014) Aaron E Darling et al. Gut Pathogens
- PhyloSift: phylogenetic analysis of genomes and metagenomes
- (2014) Aaron E. Darling et al. PeerJ
- A clinical and epidemiological review of non-toxigenic Clostridium difficile
- (2013) Mukil Natarajan et al. ANAEROBE
- Nontoxigenic Clostridium difficile Protects Hamsters against Challenge with Historic and Epidemic Strains of Toxigenic BI/NAP1/027 C. difficile
- (2013) Kristin J. Nagaro et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Evolutionary History of the Clostridium difficile Pathogenicity Locus
- (2013) Kate E. Dingle et al. Genome Biology and Evolution
- Detection of Mixed Populations of Clostridium difficile from Symptomatic Patients Using Capillary-Based Polymerase Chain Reaction Ribotyping
- (2013) Adam A. Behroozian et al. INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY
- Clostridium difficile Ribotype Diversity at Six Health Care Institutions in the United States
- (2013) S. Waslawski et al. JOURNAL OF CLINICAL MICROBIOLOGY
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
- (2013) Ross Overbeek et al. NUCLEIC ACIDS RESEARCH
- Susceptibility of Hamsters to Clostridium difficile Isolates of Differing Toxinotype
- (2013) Anthony M. Buckley et al. PLoS One
- The Role of Flagella in Clostridium difficile Pathogenesis: Comparison between a Non-Epidemic and an Epidemic Strain
- (2013) Soza T. Baban et al. PLoS One
- Risk Factors of Fecal Toxigenic or Non-Toxigenic Clostridium difficile Colonization: Impact of Toll-Like Receptor Polymorphisms and Prior Antibiotic Exposure
- (2013) Yuan-Pin Hung et al. PLoS One
- Identification of a Novel Zinc Metalloprotease through a Global Analysis of Clostridium difficile Extracellular Proteins
- (2013) Valeria Cafardi et al. PLoS One
- Surface-Layer Protein A (SlpA) Is a Major Contributor to Host-Cell Adherence of Clostridium difficile
- (2013) Michelle M. Merrigan et al. PLoS One
- Horizontal gene transfer converts non-toxigenic Clostridium difficile strains into toxin producers
- (2013) Michael S.M. Brouwer et al. Nature Communications
- Outcomes in community-acquired Clostridium difficile infection
- (2012) S. Khanna et al. ALIMENTARY PHARMACOLOGY & THERAPEUTICS
- Evaluation of an Oral Suspension of VP20621, Spores of Nontoxigenic Clostridium difficile Strain M3, in Healthy Subjects
- (2012) Stephen A. Villano et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Parameters for accurate genome alignment
- (2012) Martin C Frith et al. BMC BIOINFORMATICS
- Clostridium difficile Ribotype Does Not Predict Severe Infection
- (2012) Seth T. Walk et al. CLINICAL INFECTIOUS DISEASES
- Clostridium difficile Carriage in Healthy Infants in the Community: A Potential Reservoir for Pathogenic Strains
- (2012) C. Rousseau et al. CLINICAL INFECTIOUS DISEASES
- Clostridium difficile infection in the community: a zoonotic disease?
- (2012) M.P.M. Hensgens et al. CLINICAL MICROBIOLOGY AND INFECTION
- The continually evolving Clostridium difficile species
- (2012) Michelle D Cairns et al. Future Microbiology
- TheClostridium difficile spo0AGene Is a Persistence and Transmission Factor
- (2012) Laura J. Deakin et al. INFECTION AND IMMUNITY
- Multiple Factors Modulate Biofilm Formation by the Anaerobic Pathogen Clostridium difficile
- (2012) T. Thapa et al. JOURNAL OF BACTERIOLOGY
- Macro and Micro Diversity of Clostridium difficile Isolates from Diverse Sources and Geographical Locations
- (2012) Richard A. Stabler et al. PLoS One
- Characterisation of Clostridium difficile Biofilm Formation, a Role for Spo0A
- (2012) Lisa F. Dawson et al. PLoS One
- Easyfig: a genome comparison visualizer
- (2011) M. J. Sullivan et al. BIOINFORMATICS
- Adaptive seeds tame genomic sequence comparison
- (2011) S. M. Kielbasa et al. GENOME RESEARCH
- Design and Evaluation of a Multiplex Polymerase Chain Reaction Assay for the Simultaneous Identification of Genes for Nine Different Virulence Factors Associated with Escherichia Coli that Cause Diarrhea and Edema Disease in Swine
- (2011) Thomas A. Casey et al. JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION
- Small but Sufficient: the Rhodococcus Phage RRH1 Has the Smallest Known Siphoviridae Genome at 14.2 Kilobases
- (2011) S. Petrovski et al. JOURNAL OF VIROLOGY
- PHAST: A Fast Phage Search Tool
- (2011) Y. Zhou et al. NUCLEIC ACIDS RESEARCH
- Clinical Clostridium difficile: Clonality and Pathogenicity Locus Diversity
- (2011) Kate E. Dingle et al. PLoS One
- Evaluating Ortholog Prediction Algorithms in a Yeast Model Clade
- (2011) Leonidas Salichos et al. PLoS One
- Genome analysis of the Clostridium difficile phage ΦCD6356, a temperate phage of the Siphoviridae family
- (2010) Marianne Horgan et al. GENE
- Incorporating sequence quality data into alignment improves DNA read mapping
- (2010) Martin C. Frith et al. NUCLEIC ACIDS RESEARCH
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Reordering contigs of draft genomes using the Mauve Aligner
- (2009) Anna I. Rissman et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Bad Bugs, No Drugs: No ESCAPE Revisited
- (2009) Lance R. Peterson CLINICAL INFECTIOUS DISEASES
- Multilocus Sequence Typing ofClostridium difficile
- (2009) David Griffiths et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Clostridium difficile infection: new developments in epidemiology and pathogenesis
- (2009) Maja Rupnik et al. NATURE REVIEWS MICROBIOLOGY
- The RAST Server: Rapid Annotations using Subsystems Technology
- (2008) Ramy K Aziz et al. BMC GENOMICS
- Clostridium difficile PCR Ribotype 078: an Emerging Strain in Humans and in Pigs?
- (2008) A. Goorhuis et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Fast unfolding of communities in large networks
- (2008) Vincent D Blondel et al. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
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