Next-generation genotyping of hypervariable loci in many individuals of a non-model species: technical and theoretical implications
出版年份 2016 全文链接
标题
Next-generation genotyping of hypervariable loci in many individuals of a non-model species: technical and theoretical implications
作者
关键词
454 Titanium, Ion Torrent PGM, Major Histocompatibility Complex, Ring-tailed Lemur, <em class=EmphasisTypeItalic >Lemur catta</em>, Bezà Mahafaly, Madagascar
出版物
BMC GENOMICS
Volume 17, Issue 1, Pages -
出版商
Springer Nature
发表日期
2016-03-08
DOI
10.1186/s12864-016-2503-y
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Characterization of MHC class II B polymorphism in multiple populations of wild gorillas using non-invasive samples and next-generation sequencing
- (2015) Jörg B. Hans et al. AMERICAN JOURNAL OF PRIMATOLOGY
- Evaluation of the Ion Torrent Personal Genome Machine for Gene-Targeted Studies Using Amplicons of the Nitrogenase GenenifH
- (2015) Bangzhou Zhang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Denoising DNA deep sequencing data—high-throughput sequencing errors and their correction
- (2015) David Laehnemann et al. BRIEFINGS IN BIOINFORMATICS
- Characterization of MHC class IIB for four endangered Australian freshwater fishes obtained from ecologically divergent populations
- (2015) Seraina E. Bracamonte et al. FISH & SHELLFISH IMMUNOLOGY
- Next-generation sequencing as a powerful motor for advances in the biological and environmental sciences
- (2015) Denis Faure et al. GENETICA
- Towards allele-level human leucocyte antigens genotyping - assessing two next-generation sequencing platforms: Ion Torrent Personal Genome Machine and Illumina MiSeq
- (2015) J. L. Duke et al. International Journal of Immunogenetics
- Different ornaments signal male health and MHC variation in two populations of a warbler
- (2015) Linda A. Whittingham et al. MOLECULAR ECOLOGY
- Assessing the utility of whole genome amplified DNA for next-generation molecular ecology
- (2015) Christopher Blair et al. Molecular Ecology Resources
- Spatial pattern of adaptive and neutral genetic diversity across different biomes in the lesser anteater (Tamandua tetradactyla)
- (2015) Camila L. Clozato et al. Ecology and Evolution
- Trans-Species Polymorphism in Immune Genes: General Pattern or MHC-Restricted Phenomenon?
- (2015) Martin Těšický et al. Journal of Immunology Research
- Spatial and temporal variation at major histocompatibility complex class IIB genes in the endangered Blakiston’s fish owl
- (2015) Tetsuo I Kohyama et al. Zoological Letters
- Genetic Variation of the Major Histocompatibility Complex (MHC Class II B Gene) in the Threatened Hume’s Pheasant, Syrmaticus humiae
- (2015) Weicai Chen et al. PLoS One
- Sources of tooth wear variation early in life among known-aged wild ring-tailed lemurs (Lemur catta) at the Bezà Mahafaly Special Reserve, Madagascar
- (2014) Frank P. Cuozzo et al. AMERICAN JOURNAL OF PRIMATOLOGY
- Wild cyclic voles maintain high neutral and MHC diversity without strong evidence for parasite-mediated selection
- (2014) J. C. Winternitz et al. EVOLUTIONARY ECOLOGY
- Non-neutral evolution and reciprocal monophyly of two expressed Mhc class II B genes in Leach’s storm-petrel
- (2014) Donald C. Dearborn et al. IMMUNOGENETICS
- Survey of major histocompatibility complex class II diversity in pig-tailed macaques
- (2014) Julie A. Karl et al. IMMUNOGENETICS
- 454 screening of individual MHC variation in an endemic island passerine
- (2014) Catalina Gonzalez-Quevedo et al. IMMUNOGENETICS
- Male mate choice relies on major histocompatibility complex class I in a sex-role-reversed pipefish
- (2014) O. Roth et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Selective pressures on MHC class II genes in the guppy (Poecilia reticulata) as inferred by hierarchical analysis of population structure
- (2014) M. Herdegen et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Positive Selection on MHC Class II DRB and DQB Genes in the Bank Vole (Myodes glareolus)
- (2014) Kristin Scherman et al. JOURNAL OF MOLECULAR EVOLUTION
- Parasite load and MHC diversity in undisturbed and agriculturally modified habitats of the ornate dragon lizard
- (2014) Jacek Radwan et al. MOLECULAR ECOLOGY
- Critical review of NGS analyses for de novo genotyping multigene families
- (2014) Jackie Lighten et al. MOLECULAR ECOLOGY
- Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata)
- (2014) Jackie Lighten et al. Molecular Ecology Resources
- Ensembl 2015
- (2014) Fiona Cunningham et al. NUCLEIC ACIDS RESEARCH
- Selection and Trans-Species Polymorphism of Major Histocompatibility Complex Class II Genes in the Order Crocodylia
- (2014) Weerachai Jaratlerdsiri et al. PLoS One
- Stepwise Threshold Clustering: A New Method for Genotyping MHC Loci Using Next-Generation Sequencing Technology
- (2014) William E. Stutz et al. PLoS One
- Averting Lemur Extinctions amid Madagascar's Political Crisis
- (2014) C. Schwitzer et al. SCIENCE
- Ten years of next-generation sequencing technology
- (2014) Erwin L. van Dijk et al. TRENDS IN GENETICS
- MHC genotyping of non-model organisms using next-generation sequencing: a new methodology to deal with artefacts and allelic dropout
- (2013) Simone Sommer et al. BMC GENOMICS
- Characterization of MHC class II B polymorphism in bottlenecked New Zealand saddlebacks reveals low levels of genetic diversity
- (2013) Jolene T. Sutton et al. IMMUNOGENETICS
- Evidence for multiple MHC class II β loci in New Zealand’s critically endangered kakapo, Strigops habroptilus
- (2013) Gabrielle J. Knafler et al. IMMUNOGENETICS
- The Major Histocompatibility Complex and Primate Behavioral Ecology: New Tools and Future Questions
- (2013) Elise Huchard et al. INTERNATIONAL JOURNAL OF PRIMATOLOGY
- Nonparallelism in MHCIIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish (Coregonus clupeaformis) species pairs as revealed by next-generation sequencing
- (2013) Scott A. Pavey et al. MOLECULAR ECOLOGY
- Updating benchtop sequencing performance comparison
- (2013) Sebastian Jünemann et al. NATURE BIOTECHNOLOGY
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- The role of replicates for error mitigation in next-generation sequencing
- (2013) Kimberly Robasky et al. NATURE REVIEWS GENETICS
- Choosing a Benchtop Sequencing Machine to Characterise Helicobacter pylori Genomes
- (2013) Timothy T. Perkins et al. PLoS One
- Parallel Tagged Next-Generation Sequencing on Pooled Samples – A New Approach for Population Genetics in Ecology and Conservation
- (2013) Monika Zavodna et al. PLoS One
- Sexual selection explains more functional variation in the mammalian major histocompatibility complex than parasitism
- (2013) J. C. Winternitz et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Duplication and population dynamics shape historic patterns of selection and genetic variation at the major histocompatibility complex in rodents
- (2013) Jamie C. Winternitz et al. Ecology and Evolution
- Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data
- (2013) Lauren M. Bragg et al. PLoS Computational Biology
- Characterization and 454 pyrosequencing of Major Histocompatibility Complex class I genes in the great tit reveal complexity in a passerine system
- (2012) Irem Sepil et al. BMC EVOLUTIONARY BIOLOGY
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
- (2012) Michael Quail et al. BMC GENOMICS
- Large-scale MHC class II genotyping of a wild lemur population by next generation sequencing
- (2012) Elise Huchard et al. IMMUNOGENETICS
- Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
- (2012) M. V. Larsen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Evolution of HLA-DRB Genes
- (2012) Gaby G.M. Doxiadis et al. MOLECULAR BIOLOGY AND EVOLUTION
- MHC diversity, malaria and lifetime reproductive success in collared flycatchers
- (2012) JACEK RADWAN et al. MOLECULAR ECOLOGY
- Comparison of 454 pyrosequencing methods for characterizing the major histocompatibility complex of nonmodel species and the advantages of ultra deep coverage
- (2012) Rebekah A. Oomen et al. Molecular Ecology Resources
- Performance comparison of benchtop high-throughput sequencing platforms
- (2012) Nicholas J Loman et al. NATURE BIOTECHNOLOGY
- The ABO blood group is a trans-species polymorphism in primates
- (2012) L. Segurel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Major histocompatibility complex class II compatibility, but not class I, predicts mate choice in a bird with highly developed olfaction
- (2012) M. Strandh et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- 454 sequencing reveals extreme complexity of the class II Major Histocompatibility Complex in the collared flycatcher
- (2011) Magdalena Zagalska-Neubauer et al. BMC EVOLUTIONARY BIOLOGY
- COMPUTATIONAL PREDICTION OF MHC II-ANTIGEN BINDING SUPPORTS DIVERGENT ALLELE ADVANTAGE AND EXPLAINS TRANS-SPECIES POLYMORPHISM
- (2011) Tobias L. Lenz EVOLUTION
- Major Histocompatibility Complex (MHC) Markers in Conservation Biology
- (2011) Beata Ujvari et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Spectrum of MHC Class II Variability in Darwin's Finches and Their Close Relatives
- (2011) A. Sato et al. MOLECULAR BIOLOGY AND EVOLUTION
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- jMHC: software assistant for multilocus genotyping of gene families using next-generation amplicon sequencing
- (2011) MICHAŁ T. STUGLIK et al. Molecular Ecology Resources
- Evaluation of two approaches to genotyping major histocompatibility complex class I in a passerine-CE-SSCP and 454 pyrosequencing
- (2011) MARTA PROMEROVÁ et al. Molecular Ecology Resources
- Decoding a Substantial Set of Samples in Parallel by Massive Sequencing
- (2011) Mårten Neiman et al. PLoS One
- A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies
- (2010) Maxime Galan et al. BMC GENOMICS
- Next-generation sequencing: the solution for high-resolution, unambiguous human leukocyte antigen typing
- (2010) C. Lind et al. HUMAN IMMUNOLOGY
- Sequence analysis of the grey mouse lemur (Microcebus murinus) MHC class II DQ and DR region
- (2010) Anne Averdam et al. IMMUNOGENETICS
- MHC class II DRB diversity in raccoons (Procyon lotor) reveals associations with raccoon rabies virus (Lyssavirus)
- (2010) Vythegi Srithayakumar et al. IMMUNOGENETICS
- Functional associations of similar MHC alleles and shared parasite species in two sympatric lemurs
- (2010) Nina Schwensow et al. INFECTION GENETICS AND EVOLUTION
- Are there Ubiquitous Parasite-driven Major Histocompatibility Complex Selection Mechanisms in Gray Mouse Lemurs?
- (2010) Nina Schwensow et al. INTERNATIONAL JOURNAL OF PRIMATOLOGY
- Effects of an MHC-DRB genotype and allele number on the load of gut parasites in the bank voleMyodes glareolus
- (2010) AGNIESZKA KLOCH et al. MOLECULAR ECOLOGY
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- Opposites attract: MHC-associated mate choice in a polygynous primate
- (2009) J. M. SETCHELL et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Massive parallel MHC genotyping: titanium that shines
- (2009) K. MATHIAS WEGNER MOLECULAR ECOLOGY
- Methods for MHC genotyping in non-model vertebrates
- (2009) W. BABIK Molecular Ecology Resources
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- Next-Generation DNA Sequencing Methods
- (2008) Elaine R. Mardis Annual Review of Genomics and Human Genetics
- Inbreeding depression in ring-tailed lemurs (Lemur catta): genetic diversity predicts parasitism, immunocompetence, and survivorship
- (2008) Marie J. E. Charpentier et al. CONSERVATION GENETICS
- Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar's lemurs
- (2008) J. E. Horvath et al. GENOME RESEARCH
- Polymorphism, haplotype composition, and selection in the Mhc-DRB of wild baboons
- (2008) Elise Huchard et al. IMMUNOGENETICS
- The Genome Sequencer FLX™ System—Longer reads, more applications, straight forward bioinformatics and more complete data sets
- (2008) Marcus Droege et al. JOURNAL OF BIOTECHNOLOGY
- Next-generation DNA sequencing
- (2008) Jay Shendure et al. NATURE BIOTECHNOLOGY
- The impact of next-generation sequencing technology on genetics
- (2008) Elaine R. Mardis TRENDS IN GENETICS
- Somatic Variation in Living, Wild Ring-Tailed Lemurs (Lemur catta)
- (2007) Michelle L. Sauther et al. FOLIA PRIMATOLOGICA
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started