Comparison of 454 pyrosequencing methods for characterizing the major histocompatibility complex of nonmodel species and the advantages of ultra deep coverage

Genetic isolation of wolverine (Gulo gulo) populations at the eastern periphery of their North American distribution

(2012) Joanna Zigouris et al.   CONSERVATION GENETICS

454 sequencing reveals extreme complexity of the class II Major Histocompatibility Complex in the collared flycatcher

(2011) Magdalena Zagalska-Neubauer et al.   BMC EVOLUTIONARY BIOLOGY

COMPUTATIONAL PREDICTION OF MHC II-ANTIGEN BINDING SUPPORTS DIVERGENT ALLELE ADVANTAGE AND EXPLAINS TRANS-SPECIES POLYMORPHISM

(2011) Tobias L. Lenz   EVOLUTION

jMHC: software assistant for multilocus genotyping of gene families using next-generation amplicon sequencing

(2011) MICHAŁ T. STUGLIK et al.   Molecular Ecology Resources

Evaluation of two approaches to genotyping major histocompatibility complex class I in a passerine-CE-SSCP and 454 pyrosequencing

(2011) MARTA PROMEROVÁ et al.   Molecular Ecology Resources

Impact of historical founder effects and a recent bottleneck on MHC variability in Commander Arctic foxes (Vulpes lagopus)

(2011) Anna I. Ploshnitsa et al.   Ecology and Evolution

SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing

(2010) Emese Meglécz et al.   BIOINFORMATICS

A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies

(2010) Maxime Galan et al.   BMC GENOMICS

Parasite diversity, patterns of MHC II variation and olfactory based mate choice in diverging three-spined stickleback ecotypes

(2010) Christophe Eizaguirre et al.   EVOLUTIONARY ECOLOGY

MHC class II DRB diversity in raccoons (Procyon lotor) reveals associations with raccoon rabies virus (Lyssavirus)

(2010) Vythegi Srithayakumar et al.   IMMUNOGENETICS

Major histocompatibility complex polymorphism: dynamics and consequences of parasite-mediated local adaptation in fishes

(2010) C. Eizaguirre et al.   JOURNAL OF FISH BIOLOGY

Expression of interest: transcriptomics and the designation of conservation units

(2010) MICHAEL M. HANSEN   MOLECULAR ECOLOGY

Putative causes and consequences of MHC variation within and between locally adapted stickleback demes

(2010) R. J. SCOTT MCCAIRNS et al.   MOLECULAR ECOLOGY

Effects of an MHC-DRB genotype and allele number on the load of gut parasites in the bank voleMyodes glareolus

(2010) AGNIESZKA KLOCH et al.   MOLECULAR ECOLOGY

Geographic variation of the major histocompatibility complex in Eastern Atlantic grey seals (Halichoerus grypus)

(2010) K. CAMMEN et al.   MOLECULAR ECOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Characterization of Major Histocompatibility Complex (MHC) DRB Exon 2 and DRA Exon 3 Fragments in a Primary Terrestrial Rabies Vector (Procyon lotor)

(2010) Sarrah Castillo et al.   PLoS One

Diverse MHC IIB allele repertoire increases parasite resistance and body condition in the Long-tailed giant rat (Leopoldamys sabanus)

(2009) Tobias L Lenz et al.   BMC EVOLUTIONARY BIOLOGY

Larval fitness, microsatellite diversity and MHC class II diversity in common frog (Rana temporaria) populations

(2009) I Zeisset et al.   HEREDITY

MHC class II variation in the endangered European mink Mustela lutreola (L. 1761)—consequences for species conservation

(2009) L Becker et al.   IMMUNOGENETICS

Balancing and Directional Selection at Exon-2 of the MHC DQB1 Locus among Populations of Odontocete Cetaceans

(2009) D. Vassilakos et al.   MOLECULAR BIOLOGY AND EVOLUTION

Massive parallel MHC genotyping: titanium that shines

(2009) K. MATHIAS WEGNER   MOLECULAR ECOLOGY

New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system

(2009) WIESŁAW BABIK et al.   Molecular Ecology Resources

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS

Quality scores and SNP detection in sequencing-by-synthesis systems

(2008) W. Brockman et al.   GENOME RESEARCH

Duplication polymorphism at MHC class II DRB1 locus in the wild boar (Sus scrofa)

(2008) Federica Barbisan et al.   IMMUNOGENETICS

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Parallel tagged sequencing on the 454 platform

(2008) Matthias Meyer et al.   Nature Protocols