标题
Genome sequences of horticultural plants: past, present, and future
作者
关键词
-
出版物
Horticulture Research
Volume 6, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-10-08
DOI
10.1038/s41438-019-0195-6
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The genome of Cucurbita argyrosperma (silver-seed gourd) reveals faster rates of protein-coding gene and long noncoding RNA turnover and neofunctionalization within Cucurbita
- (2019) Josué Barrera-Redondo et al. Molecular Plant
- Sequencing a Juglans regia × J. microcarpa hybrid yields high-quality genome assemblies of parental species
- (2019) Tingting Zhu et al. Horticulture Research
- Origin and evolution of the octoploid strawberry genome
- (2019) Patrick P. Edger et al. NATURE GENETICS
- Comparative Dissection of Three Giant Genomes: Allium cepa, Allium sativum, and Allium ursinum
- (2019) Vratislav Peška et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
- (2019) Lei Gao et al. NATURE GENETICS
- A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour
- (2019) Liyi Zhang et al. Nature Communications
- Novel assembly strategy cracks open the mysteries of walnut genome evolution
- (2019) G. Albert Wu et al. Horticulture Research
- Enhanced JBrowse plugins for epigenomics data visualization
- (2018) Brigitte T. Hofmeister et al. BMC BIOINFORMATICS
- The genomes of two Eutrema species provide insight into plant adaptation to high altitudes
- (2018) Xinyi Guo et al. DNA RESEARCH
- A segmental duplication in the common ancestor of Brassicaceae is responsible for the origin of the paralogs KCS6 - KCS5 , which are not shared with other angiosperms
- (2018) Swati Singh et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- HMOD: An Omics Database for Herbal Medicine Plants
- (2018) Xiao Wang et al. Molecular Plant
- Genome of Wild Mandarin and Domestication History of Mandarin
- (2018) Lun Wang et al. Molecular Plant
- The Rosa genome provides new insights into the domestication of modern roses
- (2018) Olivier Raymond et al. NATURE GENETICS
- HMMER web server: 2018 update
- (2018) Simon C Potter et al. NUCLEIC ACIDS RESEARCH
- Genome sequence of M6, a diploid inbred clone of the high-glycoalkaloid-producing tuber-bearing potato species Solanum chacoense , reveals residual heterozygosity
- (2018) Courtney P. Leisner et al. PLANT JOURNAL
- Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
- (2018) Maximilian Griesmann et al. SCIENCE
- SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases
- (2018) Hartmut Foerster et al. Database-The Journal of Biological Databases and Curation
- Whole Genome Resequencing of Capsicum baccatum and Capsicum annuum to Discover Single Nucleotide Polymorphism Related to Powdery Mildew Resistance
- (2018) Yul-Kyun Ahn et al. Scientific Reports
- The Sequenced Angiosperm Genomes and Genome Databases
- (2018) Fei Chen et al. Frontiers in Plant Science
- Genomics of the origin and evolution of Citrus
- (2018) Guohong Albert Wu et al. NATURE
- Pan-genome of cultivated pepper (Capsicum ) and its use in gene presence-absence variation analyses
- (2018) Lijun Ou et al. NEW PHYTOLOGIST
- Historical perspectives, management and current research of citrus HLB in Guangdong of China, where the disease has been endemic for over a hundred years
- (2018) Zheng Zheng et al. PHYTOPATHOLOGY
- A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome
- (2018) Robert VanBuren et al. GigaScience
- Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops
- (2018) Yi Zheng et al. NUCLEIC ACIDS RESEARCH
- The Genome Sequence of the Wild Tomato Solanum pimpinellifolium Provides Insights Into Salinity Tolerance
- (2018) Rozaimi Razali et al. Frontiers in Plant Science
- Enhancing faba bean (Vicia faba L.) genome resources
- (2017) James W. Cooper et al. JOURNAL OF EXPERIMENTAL BOTANY
- An Overlooked Paleotetraploidization in Cucurbitaceae
- (2017) Jinpeng Wang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes
- (2017) Honghe Sun et al. Molecular Plant
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
- (2017) Robert M Bowers et al. NATURE BIOTECHNOLOGY
- Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction
- (2017) Xia Wang et al. NATURE GENETICS
- High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development
- (2017) Nicolas Daccord et al. NATURE GENETICS
- The MetaCyc database of metabolic pathways and enzymes
- (2017) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- De novo assembly of the zucchini genome reveals a whole-genome duplication associated with the origin of the Cucurbita genus
- (2017) Javier Montero-Pau et al. PLANT BIOTECHNOLOGY JOURNAL
- The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ring-spot virus resistance locus
- (2017) Shan Wu et al. PLANT JOURNAL
- High-quality genome assembly of Capsella bursa-pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution
- (2017) Artem S. Kasianov et al. PLANT JOURNAL
- Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.)
- (2017) Kazuki Mori et al. Scientific Reports
- Assessment of Genetic Diversity and Structure of Large Garlic (Allium sativum) Germplasm Bank, by Diversity Arrays Technology “Genotyping-by-Sequencing” Platform (DArTseq)
- (2017) Leticia A. Egea et al. Frontiers in Genetics
- Draft Sequencing of the Heterozygous Diploid Genome of Satsuma (Citrus unshiu Marc.) Using a Hybrid Assembly Approach
- (2017) Tokurou Shimizu et al. Frontiers in Genetics
- Transcriptome analysis of root response to citrus blight based on the newly assembled Swingle citrumelo draft genome
- (2016) Yunzeng Zhang et al. BMC GENOMICS
- Genome of Plant Maca ( Lepidium meyenii ) Illuminates Genomic Basis for High-Altitude Adaptation in the Central Andes
- (2016) Jing Zhang et al. Molecular Plant
- The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection
- (2016) Jinghua Yang et al. NATURE GENETICS
- Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice
- (2016) Kenji Yano et al. NATURE GENETICS
- A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution
- (2016) James K. Hane et al. PLANT BIOTECHNOLOGY JOURNAL
- Draft genome assembly and annotation of Glycyrrhiza uralensis , a medicinal legume
- (2016) Keiichi Mochida et al. PLANT JOURNAL
- Integrated bioinformatics to decipher the ascorbic acid metabolic network in tomato
- (2016) Valentino Ruggieri et al. PLANT MOLECULAR BIOLOGY
- The biosynthetic pathway of the nonsugar, high-intensity sweetener mogroside V fromSiraitia grosvenorii
- (2016) Maxim Itkin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The pangenome of an agronomically important crop plant Brassica oleracea
- (2016) Agnieszka A. Golicz et al. Nature Communications
- Genome sequence and analysis of the Japanese morning glory Ipomoea nil
- (2016) Atsushi Hoshino et al. Nature Communications
- Low-Coverage, Whole-Genome Sequencing of Artocarpus camansi (Moraceae) for Phylogenetic Marker Development and Gene Discovery
- (2016) Elliot M. Gardner et al. Applications in Plant Sciences
- Improved hybrid de novo genome assembly of domesticated apple (Malus x domestica)
- (2016) Xuewei Li et al. GigaScience
- Genome Survey Sequencing for the Characterization of the Genetic Background of Rosa roxburghii Tratt and Leaf Ascorbate Metabolism Genes
- (2016) Min Lu et al. PLoS One
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- A draft genome of field pennycress (Thlaspi arvense) provides tools for the domestication of a new winter biofuel crop
- (2015) K. M. Dorn et al. DNA RESEARCH
- The BioMart community portal: an innovative alternative to large, centralized data repositories
- (2015) Damian Smedley et al. NUCLEIC ACIDS RESEARCH
- The dynamic loss and gain of introns during the evolution of theBrassicaceae
- (2015) Giampiera Milia et al. PLANT JOURNAL
- Draft genome sequence of adzuki bean, Vigna angularis
- (2015) Yang Jae Kang et al. Scientific Reports
- Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement
- (2015) Jose J. De Vega et al. Scientific Reports
- Draft Sequences of the Radish (Raphanus sativus L.) Genome
- (2014) Hiroyasu Kitashiba et al. DNA RESEARCH
- Draft Genome Sequence of Eggplant (Solanum melongena L.): the Representative Solanum Species Indigenous to the Old World
- (2014) Hideki Hirakawa et al. DNA RESEARCH
- Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
- (2014) G Albert Wu et al. NATURE BIOTECHNOLOGY
- De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
- (2014) Ying-hui Li et al. NATURE BIOTECHNOLOGY
- A reference genome for common bean and genome-wide analysis of dual domestications
- (2014) Jeremy Schmutz et al. NATURE GENETICS
- Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species
- (2014) Seungill Kim et al. NATURE GENETICS
- The Sol Genomics Network (SGN)—from genotype to phenotype to breeding
- (2014) Noe Fernandez-Pozo et al. NUCLEIC ACIDS RESEARCH
- The Draft Genome Sequence of European Pear (Pyrus communis L. ‘Bartlett’)
- (2014) David Chagné et al. PLoS One
- Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
- (2014) C. Qin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Biosynthesis, regulation, and domestication of bitterness in cucumber
- (2014) Y. Shang et al. SCIENCE
- The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes
- (2014) Shengyi Liu et al. Nature Communications
- The complex jujube genome provides insights into fruit tree biology
- (2014) Meng-Jun Liu et al. Nature Communications
- Genome sequence of mungbean and insights into evolution within Vigna species
- (2014) Yang Jae Kang et al. Nature Communications
- The tobacco genome sequence and its comparison with those of tomato and potato
- (2014) Nicolas Sierro et al. Nature Communications
- Using GBrowse 2.0 to visualize and share next-generation sequence data
- (2013) L. D. Stein BRIEFINGS IN BIOINFORMATICS
- Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species
- (2013) H. Hirakawa et al. DNA RESEARCH
- Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
- (2013) Rajeev K Varshney et al. NATURE BIOTECHNOLOGY
- The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
- (2013) Ignazio Verde et al. NATURE GENETICS
- The Capsella rubella genome and the genomic consequences of rapid mating system evolution
- (2013) Tanja Slotte et al. NATURE GENETICS
- The Genome Database for Rosaceae (GDR): year 10 update
- (2013) Sook Jung et al. NUCLEIC ACIDS RESEARCH
- Draft genome sequence of the mulberry tree Morus notabilis
- (2013) Ningjia He et al. Nature Communications
- Visualizing next-generation sequencing data with JBrowse
- (2012) O. Westesson et al. BRIEFINGS IN BIOINFORMATICS
- The genome of the pear (Pyrus bretschneideri Rehd.)
- (2012) J. Wu et al. GENOME RESEARCH
- The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions
- (2012) Shaogui Guo et al. NATURE GENETICS
- The draft genome of sweet orange (Citrus sinensis)
- (2012) Qiang Xu et al. NATURE GENETICS
- PGDD: a database of gene and genome duplication in plants
- (2012) Tae-Ho Lee et al. NUCLEIC ACIDS RESEARCH
- Chromosome rearrangements during domestication of cucumber as revealed by high-density genetic mapping and draft genome assembly
- (2012) Luming Yang et al. PLANT JOURNAL
- The genome of melon (Cucumis melo L.)
- (2012) J. Garcia-Mas et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The genome of Prunus mume
- (2012) Qixiang Zhang et al. Nature Communications
- BRAD, the genetics and genomics database for Brassica plants
- (2011) Feng Cheng et al. BMC PLANT BIOLOGY
- An Archaeopteryx-like theropod from China and the origin of Avialae
- (2011) Xing Xu et al. NATURE
- The Medicago genome provides insight into the evolution of rhizobial symbioses
- (2011) Nevin D. Young et al. NATURE
- Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
- (2011) Rajeev K Varshney et al. NATURE BIOTECHNOLOGY
- The genome of the mesopolyploid crop species Brassica rapa
- (2011) Xiaowu Wang et al. NATURE GENETICS
- Genome sequence of the palaeopolyploid soybean
- (2010) Jeremy Schmutz et al. NATURE
- The genome of woodland strawberry (Fragaria vesca)
- (2010) Vladimir Shulaev et al. NATURE GENETICS
- The genome of the domesticated apple (Malus × domestica Borkh.)
- (2010) Riccardo Velasco et al. NATURE GENETICS
- Prepublication data sharing
- (2009) NATURE
- NCBI BLAST: a better web interface
- (2008) M. Johnson et al. NUCLEIC ACIDS RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More