Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

OsSPL13 controls grain size in cultivated rice

(2016) Lizhen Si et al.   NATURE GENETICS

From association to prediction: statistical methods for the dissection and selection of complex traits in plants

(2015) Alexander E Lipka et al.   CURRENT OPINION IN PLANT BIOLOGY

Longevity GWAS Using theDrosophilaGenetic Reference Panel

(2015) Dobril K. Ivanov et al.   JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

Copy number variation at the GL7 locus contributes to grain size diversity in rice

(2015) Yuexing Wang et al.   NATURE GENETICS

Genetic linkage analysis in the age of whole-genome sequencing

(2015) Jurg Ott et al.   NATURE REVIEWS GENETICS

Corrigendum to “Assessment of common variability and expression quantitative trait loci for genome-wide associations for progressive supranuclear palsy.” [Neurobiol. Aging 35 (2014) 1514.e1–1514.e12]

(2015) Raffaele Ferrari et al.   NEUROBIOLOGY OF AGING

Genomic analysis of hybrid rice varieties reveals numerous superior alleles that contribute to heterosis

(2015) Xuehui Huang et al.   Nature Communications

Whole genome re-sequencing of date palms yields insights into diversification of a fruit tree crop

(2015) Khaled M. Hazzouri et al.   Nature Communications

Rice

(2014) Chris Woolston   NATURE

Biological insights from 108 schizophrenia-associated genetic loci

(2014)   NATURE

Genomic analyses provide insights into the history of tomato breeding

(2014) Tao Lin et al.   NATURE GENETICS

Exploring genetic variation in the tomato (SolanumsectionLycopersicon) clade by whole-genome sequencing

(2014) et al.   PLANT JOURNAL

Cloning of quantitative trait genes from rice reveals conservation and divergence of photoperiod flowering pathways in Arabidopsis and rice

(2014) Kazuki Matsubara et al.   Frontiers in Plant Science

Natural Variations and Genome-Wide Association Studies in Crop Plants

(2013) Xuehui Huang et al.   Annual Review of Plant Biology

No Association between Ovarian Cancer Susceptibility Variants and Breast Cancer Risk among Chinese Women

(2013) X. Ma et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

The Next-Generation Sequencing Revolution and Its Impact on Genomics

(2013) Daniel C. Koboldt et al.   CELL

Identification of Genetic Loci Associated With Helicobacter pylori Serologic Status

(2013) Julia Mayerle et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Natural Variation in OsPRR37 Regulates Heading Date and Contributes to Rice Cultivation at a Wide Range of Latitudes

(2013) Bon-Hyuk Koo et al.   Molecular Plant

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)

(2013) Guanqing Jia et al.   NATURE GENETICS

NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars

(2013) D. Fujita et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resequencing rice genomes: an emerging new era of rice genomics

(2013) Xuehui Huang et al.   TRENDS IN GENETICS

A natural variant of NAL1, selected in high-yield rice breeding programs, pleiotropically increases photosynthesis rate

(2013) Toshiyuki Takai et al.   Scientific Reports

Uridylation of miRNAs by HEN1 SUPPRESSOR1 in Arabidopsis

(2012) Guodong Ren et al.   CURRENT BIOLOGY

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

(2012) Hui Li et al.   NATURE GENETICS

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

The nature of confounding in genome-wide association studies

(2012) Bjarni J. Vilhjálmsson et al.   NATURE REVIEWS GENETICS

Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice

(2011) Yasuyuki Takahashi et al.   GENES & GENETIC SYSTEMS

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population

(2011) Kristen L Kump et al.   NATURE GENETICS

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

(2011) Yibo Li et al.   NATURE GENETICS

Generation of Signaling Specificity inArabidopsisby Spatially Restricted Buffering of Ligand–Receptor Interactions

(2011) Emily B. Abrash et al.   PLANT CELL

Artificial selection for a green revolution gene during japonica rice domestication

(2011) K. Asano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population genetics of genomics-based crop improvement methods

(2011) Martha T. Hamblin et al.   TRENDS IN GENETICS

The role of QTLs in the breeding of high-yielding rice

(2011) Kotaro Miura et al.   TRENDS IN PLANT SCIENCE

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Conditions Under Which Genome-Wide Association Studies Will be Positively Misleading

(2010) A. Platt et al.   GENETICS

Multiple introgression events surrounding the Hd1 flowering-time gene in cultivated rice, Oryza sativa L.

(2010) Kenji Fujino et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Food Security: The Challenge of Feeding 9 Billion People

(2010) H. C. J. Godfray et al.   SCIENCE

Rare Variants Create Synthetic Genome-Wide Associations

(2010) Samuel P. Dickson et al.   PLOS BIOLOGY

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1

(2010) Ivan Baxter et al.   PLoS Genetics

Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design

(2009) S. Myles et al.   PLANT CELL

Genetic Properties of the Maize Nested Association Mapping Population

(2009) M. D. McMullen et al.   SCIENCE

Development of mini core collection of Japanese rice landrace

(2008) Kaworu Ebana et al.   BREEDING SCIENCE

From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants

(2008) Colin Cavanagh et al.   CURRENT OPINION IN PLANT BIOLOGY

Estimation of significance thresholds for genomewide association scans

(2008) Frank Dudbridge et al.   GENETIC EPIDEMIOLOGY

Genetic Design and Statistical Power of Nested Association Mapping in Maize

(2008) Jianming Yu et al.   GENETICS