Sequencing a Juglans regia × J. microcarpa hybrid yields high-quality genome assemblies of parental species
出版年份 2019 全文链接
标题
Sequencing a Juglans regia × J. microcarpa hybrid yields high-quality genome assemblies of parental species
作者
关键词
-
出版物
Horticulture Research
Volume 6, Issue 1, Pages -
出版商
Springer Nature
发表日期
2019-03-25
DOI
10.1038/s41438-019-0139-1
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Genomics: cracking the mysteries of walnuts
- (2019) Fei Chen et al. JOURNAL OF GENETICS
- Analysis of Brachypodium genomes with genome-wide optical maps
- (2018) Tingting Zhu et al. GENOME
- Structural variation and rates of genome evolution in the grass family seen through comparison of sequences of genomes greatly differing in size
- (2018) Jan Dvorak et al. PLANT JOURNAL
- Genomic Variation Among and Within Six Juglans Species
- (2018) Kristian A. Stevens et al. G3-Genes Genomes Genetics
- Hybrid assembly of the large and highly repetitive genome ofAegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
- (2017) Aleksey V. Zimin et al. GENOME RESEARCH
- Direct determination of diploid genome sequences
- (2017) Neil I. Weisenfeld et al. GENOME RESEARCH
- Gene Fractionation and Function in the Ancient Subgenomes of Maize
- (2017) Simon Renny-Byfield et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genome sequence of the progenitor of the wheat D genome Aegilops tauschii
- (2017) Ming-Cheng Luo et al. NATURE
- Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube
- (2017) Fan Zhang et al. NATURE BIOTECHNOLOGY
- High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development
- (2017) Nicolas Daccord et al. NATURE GENETICS
- Demographically idiosyncratic responses to climate change and rapid Pleistocene diversification of the walnut genus Juglans (Juglandaceae) revealed by whole-genome sequences
- (2017) Wei-Ning Bai et al. NEW PHYTOLOGIST
- Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets
- (2017) Liping Zeng et al. NEW PHYTOLOGIST
- How Single Molecule Real-Time Sequencing and Haplotype Phasing Have Enabled Reference-Grade Diploid Genome Assembly of Wine Grapes
- (2017) Andrea Minio et al. Frontiers in Plant Science
- Phylogenetic Resolution in Juglans Based on Complete Chloroplast Genomes and Nuclear DNA Sequences
- (2017) Wenpan Dong et al. Frontiers in Plant Science
- Phased diploid genome assembly with single-molecule real-time sequencing
- (2016) Chen-Shan Chin et al. NATURE METHODS
- The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non-structural polyphenols
- (2016) Pedro J. Martínez-García et al. PLANT JOURNAL
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool
- (2015) Jennifer M. Shelton et al. BMC GENOMICS
- Persistence of Subgenomes in Paleopolyploid Cotton after 60 My of Evolution
- (2015) Simon Renny-Byfield et al. MOLECULAR BIOLOGY AND EVOLUTION
- Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
- (2015) Tianzhen Zhang et al. NATURE BIOTECHNOLOGY
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- The origin of unusual chromosome constitutions among newly formed allopolyploids
- (2014) Sylwia Oleszczuk et al. AMERICAN JOURNAL OF BOTANY
- Evolution of Centromeric Retrotransposons in Grasses
- (2014) Anupma Sharma et al. Genome Biology and Evolution
- Role of Walnuts in Maintaining Brain Health with Age
- (2014) Shibu M. Poulose et al. JOURNAL OF NUTRITION
- Walnuts Decrease Risk of Cardiovascular Disease: A Summary of Efficacy and Biologic Mechanisms
- (2014) Penny M. Kris-Etherton JOURNAL OF NUTRITION
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Large-scale phylogenetic analyses reveal fagalean diversification promoted by the interplay of diaspores and environments in the Paleogene
- (2014) Xiao-Guo Xiang et al. PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS
- Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids
- (2014) M. R. Woodhouse et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Walnut Consumption Is Associated with Lower Risk of Type 2 Diabetes in Women
- (2013) An Pan et al. JOURNAL OF NUTRITION
- The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
- (2013) Ignazio Verde et al. NATURE GENETICS
- Integrated Fossil and Molecular Data Reveal the Biogeographic Diversification of the Eastern Asian-Eastern North American Disjunct Hickory Genus (Carya Nutt.)
- (2013) Jing-Bo Zhang et al. PLoS One
- Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly
- (2012) Ernest T Lam et al. NATURE BIOTECHNOLOGY
- The draft genome of sweet orange (Citrus sinensis)
- (2012) Qiang Xu et al. NATURE GENETICS
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- Biased Gene Fractionation and Dominant Gene Expression among the Subgenomes of Brassica rapa
- (2012) Feng Cheng et al. PLoS One
- The Cotton Centromere Contains a Ty3-gypsy-like LTR Retroelement
- (2012) Song Luo et al. PLoS One
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Proteinortho: Detection of (Co-)orthologs in large-scale analysis
- (2011) Marcus Lechner et al. BMC BIOINFORMATICS
- Establishing a time-scale for plant evolution
- (2011) John T. Clarke et al. NEW PHYTOLOGIST
- Targeted Identification of Short Interspersed Nuclear Element Families Shows Their Widespread Existence and Extreme Heterogeneity in Plant Genomes
- (2011) Torsten Wenke et al. PLANT CELL
- MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
- (2011) Vincent Ranwez et al. PLoS One
- Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
- (2011) J. C. Schnable et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- Functional centromeres in soybean include two distinct tandem repeats and a retrotransposon
- (2010) Ahmet L. Tek et al. CHROMOSOME RESEARCH
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- The genome of Theobroma cacao
- (2010) Xavier Argout et al. NATURE GENETICS
- The genome of the domesticated apple (Malus × domestica Borkh.)
- (2010) Riccardo Velasco et al. NATURE GENETICS
- MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
- (2010) Y. Han et al. NUCLEIC ACIDS RESEARCH
- Deficiency in Silicon Uptake Affects Cytological, Physiological, and Biochemical Events in the Rice–Bipolaris oryzaeInteraction
- (2010) Leandro J. Dallagnol et al. PHYTOPATHOLOGY
- KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies
- (2010) Dapeng Wang et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Nested Ty3-gypsy retrotransposons of a single Beta procumbens centromere contain a putative chromodomain
- (2009) Beatrice Weber et al. CHROMOSOME RESEARCH
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- The B73 Maize Genome: Complexity, Diversity, and Dynamics
- (2009) P. S. Schnable et al. SCIENCE
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