Prediction of aptamer-protein interacting pairs using an ensemble classifier in combination with various protein sequence attributes

GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome

(2015) Fuyi Li et al.   BIOINFORMATICS

Identifying DNA-binding proteins by combining support vector machine and PSSM distance transformation

(2015) Ruifeng Xu et al.   BMC Systems Biology

Aptamers: Active Targeting Ligands for Cancer Diagnosis and Therapy

(2015) Xu Wu et al.   Theranostics

An Ensemble Method with Hybrid Features to Identify Extracellular Matrix Proteins

(2015) Runtao Yang et al.   PLoS One

Using Support Vector Machine Ensembles for Target Audience Classification on Twitter

(2015) Siaw Ling Lo et al.   PLoS One

Identification of mitochondrial proteins of malaria parasite using analysis of variance

(2014) Hui Ding et al.   AMINO ACIDS

IDM-PhyChm-Ens: Intelligent decision-making ensemble methodology for classification of human breast cancer using physicochemical properties of amino acids

(2014) Safdar Ali et al.   AMINO ACIDS

PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition

(2014) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

(2014) Shou-Hui Guo et al.   BIOINFORMATICS

Sequence-based identification of recombination spots using pseudo nucleic acid representation and recursive feature extraction by linear kernel SVM

(2014) Liqi Li et al.   BMC BIOINFORMATICS

PSNO: Predicting Cysteine S-Nitrosylation Sites by Incorporating Various Sequence-Derived Features into the General Form of Chou’s PseAAC

(2014) Jian Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

iRSpot-TNCPseAAC: Identify Recombination Spots with Trinucleotide Composition and Pseudo Amino Acid Components

(2014) Wang-Ren Qiu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Chou׳s pseudo amino acid composition improves sequence-based antifreeze protein prediction

(2014) Sukanta Mondal et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of protein structure classes using hybrid space of multi-profile Bayes and bi-gram probability feature spaces

(2014) Maqsood Hayat et al.   JOURNAL OF THEORETICAL BIOLOGY

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

Prediction of Aptamer-Target Interacting Pairs with Pseudo-Amino Acid Composition

(2014) Bi-Qing Li et al.   PLoS One

Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets

(2013) Mingjun Wang et al.   BIOINFORMATICS

Predicting protein-ATP binding sites from primary sequence through fusing bi-profile sampling of multi-view features

(2013) Ya-Nan Zhang et al.   BMC BIOINFORMATICS

In silico approaches for designing highly effective cell penetrating peptides

(2013) Ankur Gautam et al.   Journal of Translational Medicine

AcalPred: A Sequence-Based Tool for Discriminating between Acidic and Alkaline Enzymes

(2013) Hao Lin et al.   PLoS One

Using ensemble SVM to identify human GPCRs N-linked glycosylation sites based on the general form of Chou's PseAAC

(2013) H.-L. Xie et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Potent Anticoagulant Aptamer Directed against Factor IXa Blocks Macromolecular Substrate Interaction

(2012) Bruce Sullenger et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Predicting promoters by pseudo-trinucleotide compositions based on discrete wavelets transform

(2012) Xuan Zhou et al.   JOURNAL OF THEORETICAL BIOLOGY

A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition

(2012) Alok Sharma et al.   JOURNAL OF THEORETICAL BIOLOGY

An Ensemble Classifier for Eukaryotic Protein Subcellular Location Prediction Using Gene Ontology Categories and Amino Acid Hydrophobicity

(2012) Liqi Li et al.   PLoS One

Prediction of Protein Domain with mRMR Feature Selection and Analysis

(2012) Bi-Qing Li et al.   PLoS One

Aptamer base: a collaborative knowledge base to describe aptamers and SELEX experiments

(2012) Jose Cruz-Toledo et al.   Database-The Journal of Biological Databases and Curation

Identification of protein methylation sites by coupling improved ant colony optimization algorithm and support vector machine

(2011) Zhan-Chao Li et al.   ANALYTICA CHIMICA ACTA

Nucleic Acid Aptamers Against Proteases

(2011) D. M. Dupont et al.   CURRENT MEDICINAL CHEMISTRY

Prediction of Cell Penetrating Peptides by Support Vector Machines

(2011) William S. Sanders et al.   PLoS Computational Biology

A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction

(2010) Sitanshu Sekhar Sahu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Hybrid approaches to attribute reduction based on indiscernibility and discernibility relation

(2010) J. Qian et al.   INTERNATIONAL JOURNAL OF APPROXIMATE REASONING

Aptamers as therapeutics

(2010) Anthony D. Keefe et al.   NATURE REVIEWS DRUG DISCOVERY

SecretP: A new method for predicting mammalian secreted proteins

(2010) Lezheng Yu et al.   PEPTIDES

Identifying Human Kinase-Specific Protein Phosphorylation Sites by Integrating Heterogeneous Information from Various Sources

(2010) Tingting Li et al.   PLoS One

Aptamers and riboswitches: perspectives in biotechnology

(2009) Julia E. Weigand et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Direct In Vitro Selection of Hemin-Binding DNA Aptamer with Peroxidase Activity

(2009) Mingzhe Liu et al.   BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN

Prediction of subcellular location of mycobacterial protein using feature selection techniques

(2009) Hao Lin et al.   MOLECULAR DIVERSITY

Improved Prediction of Lysine Acetylation by Support Vector Machines

(2009) Songling Li et al.   PROTEIN AND PEPTIDE LETTERS

Assessment of disorder predictions in CASP8

(2009) Orly Noivirt-Brik et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Local DNA Topography Correlates with Functional Noncoding Regions of the Human Genome

(2009) S. C. J. Parker et al.   SCIENCE

An information granulation based data mining approach for classifying imbalanced data

(2008) Mu-Chen Chen et al.   INFORMATION SCIENCES

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

(2008) Kuo-Chen Chou et al.   Nature Protocols

Aptamer-based biosensors

(2007) Shiping Song et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY